RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 BTLAQ7Z6A9 289 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 SRGAP1Q7Z6B7 1085 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 RHPN2Q8IUC4 686 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 ETFBKMTQ8IXQ9 262 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 LRRC71Q8N4P6 559 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 KIAA0895Q8NCT3 520 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 DEPTORQ8TB45 409 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 GOLGA5Q8TBA6 731 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 ENOX1Q8TC92 643 aaKnown RBP8.11□□□□□ -1.11
CD44-228ENST00000528455 SCFD1Q8WVM8 642 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 IRF7Q92985 503 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 HPS3Q969F9 1004 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 ABHD17AQ96GS6 310 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 TOX2Q96NM4 488 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 ACCSQ96QU6 501 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 C2orf40Q9H1Z8 148 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 FZD8Q9H461 694 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 TBC1D7Q9P0N9 293 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 ARHGAP28Q9P2N2 729 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 EGFL7Q9UHF1 273 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 TBX20Q9UMR3 447 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 EXOC7Q9UPT5 735 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 TRAF3IP3Q9Y228 551 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 AKT3Q9Y243 479 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 GDAQ9Y2T3 454 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 SQORQ9Y6N5 450 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 LAMA2P24043 3122 aaKnown RBP8.11□□□□□ -1.11
CD44-228ENST00000528455 UBE4BO95155 1302 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 DENND3A2RUS2 1198 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 DCDC2CA8MYV0 355 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 SLC16A4O15374 487 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 PQBP1O60828 265 aaKnown RBP8.1□□□□□ -1.11
CD44-228ENST00000528455 GPR32O75388 356 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 WFS1O76024 890 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 MICAL2O94851 1124 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 FGFR1OPO95684 399 aaKnown RBP8.1□□□□□ -1.11
CD44-228ENST00000528455 CD4P01730 458 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 CLTBP09497 229 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 RPL13P26373 211 aaKnown RBP8.1□□□□□ -1.11
CD44-228ENST00000528455 HOXD13P35453 343 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 GPC3P51654 580 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 CLCN3P51790 818 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 CRYBB1P53674 252 aaPredicted RBP8.1□□□□□ -1.11
CD44-228ENST00000528455 LRRC63Q05C16 580 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 NCBP1Q09161 790 aaKnown RBP8.1□□□□□ -1.11
CD44-228ENST00000528455 STRN3Q13033 797 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 CAPSQ13938 189 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 MYBPC2Q14324 1141 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 GAS6Q14393 721 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 IQCB1Q15051 598 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 NFIL3Q16649 462 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 FAM187BQ17R55 369 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 LRIT3Q3SXY7 679 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 ZC2HC1CQ53FD0 456 aaPredicted RBP8.1□□□□□ -1.11
CD44-228ENST00000528455 FAM47CQ5HY64 1035 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 L1TD1Q5T7N2 865 aaKnown RBP8.1□□□□□ -1.11
CD44-228ENST00000528455 LCE2AQ5TA79 106 aaPredicted RBP8.1□□□□□ -1.11
CD44-228ENST00000528455 SPATA1Q5VX52 437 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 CDCA2Q69YH5 1023 aaPredicted RBP8.1□□□□□ -1.11
CD44-228ENST00000528455 SLFN12LQ6IEE8 588 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 FOXR1Q6PIV2 292 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 KSR1Q8IVT5 923 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 ZBTB8OSQ8IWT0 167 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 USP38Q8NB14 1042 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 RNF149Q8NC42 400 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 ASAP3Q8TDY4 903 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 DNAJB3Q8WWF6 145 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 BSNDQ8WZ55 320 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 P2RX5Q93086 422 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 CELF4Q9BZC1 486 aaKnown RBP8.1□□□□□ -1.11
CD44-228ENST00000528455 GCOM2Q9BZD3 368 aaPredicted RBP8.1□□□□□ -1.11
CD44-228ENST00000528455 DNAJC25Q9H1X3 360 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 ADAMTS10Q9H324 1103 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 KCTD10Q9H3F6 313 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 IFT122Q9HBG6 1241 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 MAPK8IP1Q9UQF2 711 aa8.1□□□□□ -1.11
CD44-228ENST00000528455 LAMA3Q16787 3333 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 A0A087WZ62 844 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 DCDC2BA2VCK2 349 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 TRIM43BA6NCK2 446 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 LRRIQ4A6NIV6 560 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 ACKR2O00590 384 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 KHNYNO15037 678 aaKnown RBP8.09□□□□□ -1.11
CD44-228ENST00000528455 TLR3O15455 904 aaKnown RBP8.09□□□□□ -1.11
CD44-228ENST00000528455 TGFB1I1O43294 461 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 CALUO43852 315 aaPredicted RBP8.09□□□□□ -1.11
CD44-228ENST00000528455 ICMTO60725 284 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 PRPF6O94906 941 aaKnown RBP8.09□□□□□ -1.11
CD44-228ENST00000528455 PIGRP01833 764 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 VTNP04004 478 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 MYBP10242 640 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 RAG1P15918 1043 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 NPR3P17342 541 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 EIF4BP23588 611 aaKnown RBP8.09□□□□□ -1.11
CD44-228ENST00000528455 AXLP30530 894 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 CASP5P51878 434 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 FKBP3Q00688 224 aaKnown RBP8.09□□□□□ -1.11
CD44-228ENST00000528455 RBL2Q08999 1139 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 PAK1Q13153 545 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 HSP90AA2PQ14568 343 aaPredicted RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms