RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 SECISBP2LQ93073 1101 aaKnown RBP20.39■□□□□ 0.86
VPS28-207ENST00000526977 TRPV2Q9Y5S1 764 aa20.39■□□□□ 0.86
VPS28-207ENST00000526977 BZW2Q9Y6E2 419 aaKnown RBP20.39■□□□□ 0.86
VPS28-207ENST00000526977 SGPL1O95470 568 aa20.39■□□□□ 0.85
VPS28-207ENST00000526977 ADRB2P07550 413 aa20.39■□□□□ 0.85
VPS28-207ENST00000526977 PTK2Q05397 1052 aa20.39■□□□□ 0.85
VPS28-207ENST00000526977 CYP24A1Q07973 514 aa20.39■□□□□ 0.85
VPS28-207ENST00000526977 KYAT1Q16773 422 aa20.39■□□□□ 0.85
VPS28-207ENST00000526977 CRELD2Q6UXH1 353 aaPredicted RBP20.39■□□□□ 0.85
VPS28-207ENST00000526977 APBB1IPQ7Z5R6 666 aaPredicted RBP20.39■□□□□ 0.85
VPS28-207ENST00000526977 PDCL2Q8N4E4 241 aa20.39■□□□□ 0.85
VPS28-207ENST00000526977 LMO3Q8TAP4 145 aa20.39■□□□□ 0.85
VPS28-207ENST00000526977 PLEKHO2Q8TD55 490 aa20.39■□□□□ 0.85
VPS28-207ENST00000526977 PARD3BQ8TEW8 1205 aa20.39■□□□□ 0.85
VPS28-207ENST00000526977 ADPGKQ9BRR6 497 aa20.39■□□□□ 0.85
VPS28-207ENST00000526977 CRISPLD2Q9H0B8 497 aa20.39■□□□□ 0.85
VPS28-207ENST00000526977 INTS2Q9H0H0 1204 aaKnown RBP20.39■□□□□ 0.85
VPS28-207ENST00000526977 TRMT13Q9NUP7 481 aaKnown RBP20.39■□□□□ 0.85
VPS28-207ENST00000526977 ADAMTS1Q9UHI8 967 aa20.39■□□□□ 0.85
VPS28-207ENST00000526977 CDY2AQ9Y6F7 541 aa20.39■□□□□ 0.85
VPS28-207ENST00000526977 ENC1O14682 589 aa20.38■□□□□ 0.85
VPS28-207ENST00000526977 CAND2O75155 1236 aa20.38■□□□□ 0.85
VPS28-207ENST00000526977 MCF2P10911 925 aa20.38■□□□□ 0.85
VPS28-207ENST00000526977 PRKCIP41743 596 aa20.38■□□□□ 0.85
VPS28-207ENST00000526977 ACOT2P49753 483 aa20.38■□□□□ 0.85
VPS28-207ENST00000526977 MYL7Q01449 175 aa20.38■□□□□ 0.85
VPS28-207ENST00000526977 PPP3CAQ08209 521 aa20.38■□□□□ 0.85
VPS28-207ENST00000526977 ZNF571Q7Z3V5 609 aaPredicted RBP20.38■□□□□ 0.85
VPS28-207ENST00000526977 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.38■□□□□ 0.85
VPS28-207ENST00000526977 STK33Q9BYT3 514 aa20.38■□□□□ 0.85
VPS28-207ENST00000526977 PDZD7Q9H5P4 517 aa20.38■□□□□ 0.85
VPS28-207ENST00000526977 FAM189A1O60320 539 aa20.37■□□□□ 0.85
VPS28-207ENST00000526977 THPOP40225 353 aa20.37■□□□□ 0.85
VPS28-207ENST00000526977 POU5F1Q01860 360 aaKnown RBP20.37■□□□□ 0.85
VPS28-207ENST00000526977 PAPD7Q5XG87 772 aaKnown RBP20.37■□□□□ 0.85
VPS28-207ENST00000526977 EEF1DP3Q658K8 133 aa20.37■□□□□ 0.85
VPS28-207ENST00000526977 RSRC2Q7L4I2 434 aaKnown RBP20.37■□□□□ 0.85
VPS28-207ENST00000526977 U2AF1L4Q8WU68 220 aaKnown RBP20.37■□□□□ 0.85
VPS28-207ENST00000526977 TMEM40Q8WWA1 233 aa20.37■□□□□ 0.85
VPS28-207ENST00000526977 WNT8BQ93098 351 aa20.37■□□□□ 0.85
VPS28-207ENST00000526977 CPB2Q96IY4 423 aa20.37■□□□□ 0.85
VPS28-207ENST00000526977 DNAJC12Q9UKB3 198 aa20.37■□□□□ 0.85
VPS28-207ENST00000526977 P4HA2O15460 535 aa20.37■□□□□ 0.85
VPS28-207ENST00000526977 N4BP1O75113 896 aaKnown RBP20.37■□□□□ 0.85
VPS28-207ENST00000526977 TFRCP02786 760 aaKnown RBP20.37■□□□□ 0.85
VPS28-207ENST00000526977 ATP1A1P05023 1023 aaKnown RBP20.37■□□□□ 0.85
VPS28-207ENST00000526977 HARSP12081 509 aaKnown RBP20.37■□□□□ 0.85
VPS28-207ENST00000526977 HOXA11P31270 313 aaPredicted RBP20.37■□□□□ 0.85
VPS28-207ENST00000526977 GTF2H1P32780 548 aa20.37■□□□□ 0.85
VPS28-207ENST00000526977 CDK7P50613 346 aa20.37■□□□□ 0.85
VPS28-207ENST00000526977 CETN1Q12798 172 aa20.37■□□□□ 0.85
VPS28-207ENST00000526977 PSMD6Q15008 389 aa20.37■□□□□ 0.85
VPS28-207ENST00000526977 TRAPPC11Q7Z392 1133 aa20.37■□□□□ 0.85
VPS28-207ENST00000526977 CCDC127Q96BQ5 260 aa20.37■□□□□ 0.85
VPS28-207ENST00000526977 CDT1Q9H211 546 aa20.37■□□□□ 0.85
VPS28-207ENST00000526977 RBAKQ9NYW8 714 aaPredicted RBP20.37■□□□□ 0.85
VPS28-207ENST00000526977 SALL4Q9UJQ4 1053 aa20.37■□□□□ 0.85
VPS28-207ENST00000526977 PMM2O15305 246 aa20.36■□□□□ 0.85
VPS28-207ENST00000526977 CHRNA1P02708 482 aa20.36■□□□□ 0.85
VPS28-207ENST00000526977 FGFR4P22455 802 aa20.36■□□□□ 0.85
VPS28-207ENST00000526977 NOTUMQ6P988 496 aa20.36■□□□□ 0.85
VPS28-207ENST00000526977 TXLNBQ8N3L3 684 aa20.36■□□□□ 0.85
VPS28-207ENST00000526977 CEP112Q8N8E3 955 aa20.36■□□□□ 0.85
VPS28-207ENST00000526977 FNBP1Q96RU3 617 aa20.36■□□□□ 0.85
VPS28-207ENST00000526977 SENP6Q9GZR1 1112 aaPredicted RBP20.36■□□□□ 0.85
VPS28-207ENST00000526977 CPSF3Q9UKF6 684 aaKnown RBP20.36■□□□□ 0.85
VPS28-207ENST00000526977 B4GALT4O60513 344 aa20.36■□□□□ 0.85
VPS28-207ENST00000526977 MOCS3O95396 460 aa20.36■□□□□ 0.85
VPS28-207ENST00000526977 STAT1P42224 750 aa20.36■□□□□ 0.85
VPS28-207ENST00000526977 GCLMP48507 274 aa20.36■□□□□ 0.85
VPS28-207ENST00000526977 CLDN10P78369 228 aa20.36■□□□□ 0.85
VPS28-207ENST00000526977 MGAT3Q09327 533 aa20.36■□□□□ 0.85
VPS28-207ENST00000526977 WHAMMP3Q1A5X7 153 aa20.36■□□□□ 0.85
VPS28-207ENST00000526977 PHLDB3Q6NSJ2 640 aa20.36■□□□□ 0.85
VPS28-207ENST00000526977 CDR2LQ86X02 465 aaPredicted RBP20.36■□□□□ 0.85
VPS28-207ENST00000526977 TRIM58Q8NG06 486 aa20.36■□□□□ 0.85
VPS28-207ENST00000526977 APEX2Q9UBZ4 518 aa20.36■□□□□ 0.85
VPS28-207ENST00000526977 PUF60Q9UHX1 559 aaKnown RBP20.36■□□□□ 0.85
VPS28-207ENST00000526977 TACC1O75410 805 aa20.35■□□□□ 0.85
VPS28-207ENST00000526977 PNMA6AP0CW24 399 aaPredicted RBP20.35■□□□□ 0.85
VPS28-207ENST00000526977 DRAP1Q14919 205 aaPredicted RBP20.35■□□□□ 0.85
VPS28-207ENST00000526977 SURF1Q15526 300 aa20.35■□□□□ 0.85
VPS28-207ENST00000526977 TRIM71Q2Q1W2 868 aaKnown RBP20.35■□□□□ 0.85
VPS28-207ENST00000526977 DCAF4L1Q3SXM0 396 aa20.35■□□□□ 0.85
VPS28-207ENST00000526977 FAM26DQ5JW98 314 aa20.35■□□□□ 0.85
VPS28-207ENST00000526977 SLC27A1Q6PCB7 646 aa20.35■□□□□ 0.85
VPS28-207ENST00000526977 BRSK2Q8IWQ3 736 aa20.35■□□□□ 0.85
VPS28-207ENST00000526977 THNSL1Q8IYQ7 743 aa20.35■□□□□ 0.85
VPS28-207ENST00000526977 GPR88Q9GZN0 384 aa20.35■□□□□ 0.85
VPS28-207ENST00000526977 TRPV6Q9H1D0 765 aa20.35■□□□□ 0.85
VPS28-207ENST00000526977 LUC7LQ9NQ29 371 aaKnown RBP20.35■□□□□ 0.85
VPS28-207ENST00000526977 CAPN6Q9Y6Q1 641 aa20.35■□□□□ 0.85
VPS28-207ENST00000526977 BRCA2P51587 3418 aa20.34■□□□□ 0.85
VPS28-207ENST00000526977 LRRIQ3A6PVS8 624 aaPredicted RBP20.34■□□□□ 0.85
VPS28-207ENST00000526977 F8VZ95 297 aa20.34■□□□□ 0.85
VPS28-207ENST00000526977 GFPT2O94808 682 aa20.34■□□□□ 0.85
VPS28-207ENST00000526977 FERP16591 822 aa20.34■□□□□ 0.85
VPS28-207ENST00000526977 CAPN2P17655 700 aa20.34■□□□□ 0.85
VPS28-207ENST00000526977 SOX5P35711 763 aa20.34■□□□□ 0.85
VPS28-207ENST00000526977 ZBTB41Q5SVQ8 909 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 183.5 ms