RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 RABGGTAQ92696 567 aa22.51■■□□□ 1.19
VPS28-206ENST00000526734 KHSRPQ92945 711 aaKnown RBP eCLIP22.51■■□□□ 1.19
VPS28-206ENST00000526734 APOL5Q9BWW9 433 aa22.51■■□□□ 1.19
VPS28-206ENST00000526734 CACNG4Q9UBN1 327 aa22.51■■□□□ 1.19
VPS28-206ENST00000526734 CFAP45Q9UL16 551 aa22.51■■□□□ 1.19
VPS28-206ENST00000526734 MUC3AQ02505 3323 aa22.51■■□□□ 1.19
VPS28-206ENST00000526734 OGTO15294 1046 aa22.5■■□□□ 1.19
VPS28-206ENST00000526734 CLCNKBP51801 687 aa22.5■■□□□ 1.19
VPS28-206ENST00000526734 ALCAMQ13740 583 aa22.5■■□□□ 1.19
VPS28-206ENST00000526734 HERC4Q5GLZ8 1057 aaPredicted RBP22.5■■□□□ 1.19
VPS28-206ENST00000526734 TMEM31Q5JXX7 168 aa22.5■■□□□ 1.19
VPS28-206ENST00000526734 RTP2Q5QGT7 225 aa22.5■■□□□ 1.19
VPS28-206ENST00000526734 SLFN12LQ6IEE8 588 aa22.5■■□□□ 1.19
VPS28-206ENST00000526734 DYMQ7RTS9 669 aa22.5■■□□□ 1.19
VPS28-206ENST00000526734 GPR149Q86SP6 731 aa22.5■■□□□ 1.19
VPS28-206ENST00000526734 RNF135Q8IUD6 432 aa22.5■■□□□ 1.19
VPS28-206ENST00000526734 HASPINQ8TF76 798 aa22.5■■□□□ 1.19
VPS28-206ENST00000526734 RPGRIP1Q96KN7 1286 aa22.5■■□□□ 1.19
VPS28-206ENST00000526734 MAN1C1Q9NR34 630 aa22.5■■□□□ 1.19
VPS28-206ENST00000526734 OLFML3Q9NRN5 406 aa22.5■■□□□ 1.19
VPS28-206ENST00000526734 TFIP11Q9UBB9 837 aaKnown RBP22.5■■□□□ 1.19
VPS28-206ENST00000526734 MYMKA6NI61 221 aa22.49■■□□□ 1.19
VPS28-206ENST00000526734 XPOTO43592 962 aaKnown RBP22.49■■□□□ 1.19
VPS28-206ENST00000526734 GPR37L1O60883 481 aa22.49■■□□□ 1.19
VPS28-206ENST00000526734 FGFR3P22607 806 aa22.49■■□□□ 1.19
VPS28-206ENST00000526734 PSMD5Q16401 504 aa22.49■■□□□ 1.19
VPS28-206ENST00000526734 SLC10A6Q3KNW5 377 aa22.49■■□□□ 1.19
VPS28-206ENST00000526734 SFR1Q86XK3 245 aa22.49■■□□□ 1.19
VPS28-206ENST00000526734 CD302Q8IX05 232 aa22.49■■□□□ 1.19
VPS28-206ENST00000526734 DNAJC19Q96DA6 116 aa22.49■■□□□ 1.19
VPS28-206ENST00000526734 TNMDQ9H2S6 317 aa22.49■■□□□ 1.19
VPS28-206ENST00000526734 EXOC7Q9UPT5 735 aa22.49■■□□□ 1.19
VPS28-206ENST00000526734 MYH15Q9Y2K3 1946 aa22.49■■□□□ 1.19
VPS28-206ENST00000526734 A0A0B4J269 797 aa22.48■■□□□ 1.19
VPS28-206ENST00000526734 PODXLO00592 558 aa22.48■■□□□ 1.19
VPS28-206ENST00000526734 PAPLNO95428 1278 aa22.48■■□□□ 1.19
VPS28-206ENST00000526734 NMT1P30419 496 aaKnown RBP22.48■■□□□ 1.19
VPS28-206ENST00000526734 POU5F1Q01860 360 aaKnown RBP22.48■■□□□ 1.19
VPS28-206ENST00000526734 PPP2R3AQ06190 1150 aa22.48■■□□□ 1.19
VPS28-206ENST00000526734 ZNF720Q7Z2F6 126 aa22.48■■□□□ 1.19
VPS28-206ENST00000526734 CEP57Q86XR8 500 aa22.48■■□□□ 1.19
VPS28-206ENST00000526734 C12orf76Q8N812 135 aaPredicted RBP22.48■■□□□ 1.19
VPS28-206ENST00000526734 B3GALT6Q96L58 329 aa22.48■■□□□ 1.19
VPS28-206ENST00000526734 ZMAT2Q96NC0 199 aaKnown RBP22.48■■□□□ 1.19
VPS28-206ENST00000526734 POMKQ9H5K3 350 aa22.48■■□□□ 1.19
VPS28-206ENST00000526734 MAGEF1Q9HAY2 307 aa22.48■■□□□ 1.19
VPS28-206ENST00000526734 ZDHHC7Q9NXF8 308 aa22.48■■□□□ 1.19
VPS28-206ENST00000526734 USTQ9Y2C2 406 aa22.48■■□□□ 1.19
VPS28-206ENST00000526734 TTC26A0AVF1 554 aa22.47■■□□□ 1.19
VPS28-206ENST00000526734 CXCL8P10145 99 aa22.47■■□□□ 1.19
VPS28-206ENST00000526734 AMPD3Q01432 767 aa22.47■■□□□ 1.19
VPS28-206ENST00000526734 SOX4Q06945 474 aaPredicted RBP22.47■■□□□ 1.19
VPS28-206ENST00000526734 FOXD4L5Q5VV16 416 aaPredicted RBP22.47■■□□□ 1.19
VPS28-206ENST00000526734 TMC5Q6UXY8 1006 aa22.47■■□□□ 1.19
VPS28-206ENST00000526734 ANKS3Q6ZW76 656 aa22.47■■□□□ 1.19
VPS28-206ENST00000526734 IQUBQ8NA54 791 aa22.47■■□□□ 1.19
VPS28-206ENST00000526734 LNX1Q8TBB1 728 aaPredicted RBP22.47■■□□□ 1.19
VPS28-206ENST00000526734 FOXD4L4Q8WXT5 416 aaPredicted RBP22.47■■□□□ 1.19
VPS28-206ENST00000526734 PYM1Q9BRP8 204 aaKnown RBP22.47■■□□□ 1.19
VPS28-206ENST00000526734 MSTO1Q9BUK6 570 aa22.47■■□□□ 1.19
VPS28-206ENST00000526734 HAPLN2Q9GZV7 340 aa22.47■■□□□ 1.19
VPS28-206ENST00000526734 MRPL44Q9H9J2 332 aaKnown RBP22.47■■□□□ 1.19
VPS28-206ENST00000526734 RPF1Q9H9Y2 349 aaKnown RBP22.47■■□□□ 1.19
VPS28-206ENST00000526734 GOLGA2P5Q9HBQ8 144 aa22.47■■□□□ 1.19
VPS28-206ENST00000526734 UBQLN1Q9UMX0 589 aaKnown RBP22.47■■□□□ 1.19
VPS28-206ENST00000526734 STYXL1Q9Y6J8 313 aa22.47■■□□□ 1.19
VPS28-206ENST00000526734 A0A087X0B3 334 aa22.46■■□□□ 1.19
VPS28-206ENST00000526734 FRMD3A2A2Y4 597 aa22.46■■□□□ 1.19
VPS28-206ENST00000526734 SYN3O14994 580 aa22.46■■□□□ 1.19
VPS28-206ENST00000526734 TGM5O43548 720 aa22.46■■□□□ 1.19
VPS28-206ENST00000526734 PPP1R37O75864 691 aa22.46■■□□□ 1.19
VPS28-206ENST00000526734 CYP3A5P20815 502 aa22.46■■□□□ 1.19
VPS28-206ENST00000526734 POSTNQ15063 836 aa22.46■■□□□ 1.19
VPS28-206ENST00000526734 LILRA6Q6PI73 481 aa22.46■■□□□ 1.19
VPS28-206ENST00000526734 PRSS55Q6UWB4 352 aaPredicted RBP22.46■■□□□ 1.19
VPS28-206ENST00000526734 CCDC149Q6ZUS6 474 aa22.46■■□□□ 1.19
VPS28-206ENST00000526734 CCDC65Q8IXS2 484 aa22.46■■□□□ 1.19
VPS28-206ENST00000526734 PLCD3Q8N3E9 789 aa22.46■■□□□ 1.19
VPS28-206ENST00000526734 PDILTQ8N807 584 aa22.46■■□□□ 1.19
VPS28-206ENST00000526734 MTRRQ9UBK8 725 aa22.46■■□□□ 1.19
VPS28-206ENST00000526734 NUB1Q9Y5A7 615 aa22.46■■□□□ 1.19
VPS28-206ENST00000526734 PCDHB13Q9Y5F0 798 aa22.46■■□□□ 1.19
VPS28-206ENST00000526734 BACE2Q9Y5Z0 518 aa22.46■■□□□ 1.19
VPS28-206ENST00000526734 MEFVO15553 781 aaPredicted RBP22.45■■□□□ 1.18
VPS28-206ENST00000526734 FAM189A1O60320 539 aa22.45■■□□□ 1.18
VPS28-206ENST00000526734 ADRB2P07550 413 aa22.45■■□□□ 1.18
VPS28-206ENST00000526734 IDEP14735 1019 aa22.45■■□□□ 1.18
VPS28-206ENST00000526734 PAX3P23760 479 aa22.45■■□□□ 1.18
VPS28-206ENST00000526734 E2F4Q16254 413 aa22.45■■□□□ 1.18
VPS28-206ENST00000526734 SEZ6Q53EL9 994 aa22.45■■□□□ 1.18
VPS28-206ENST00000526734 ZC2HC1CQ53FD0 456 aaPredicted RBP22.45■■□□□ 1.18
VPS28-206ENST00000526734 CD300LGQ6UXG3 332 aa22.45■■□□□ 1.18
VPS28-206ENST00000526734 PALB2Q86YC2 1186 aa22.45■■□□□ 1.18
VPS28-206ENST00000526734 TDRD5Q8NAT2 981 aaKnown RBP22.45■■□□□ 1.18
VPS28-206ENST00000526734 C3orf58Q8NDZ4 430 aa22.45■■□□□ 1.18
VPS28-206ENST00000526734 ACCSQ96QU6 501 aa22.45■■□□□ 1.18
VPS28-206ENST00000526734 STRA6Q9BX79 667 aa22.45■■□□□ 1.18
VPS28-206ENST00000526734 PANK2Q9BZ23 570 aa22.45■■□□□ 1.18
VPS28-206ENST00000526734 KBTBD4Q9NVX7 518 aa22.45■■□□□ 1.18
VPS28-206ENST00000526734 FAM13BQ9NYF5 915 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms