RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 UBE3CQ15386 1083 aa4.95□□□□□ -1.62
NUP54-212ENST00000513248 SMN1Q16637 294 aaKnown RBP4.95□□□□□ -1.62
NUP54-212ENST00000513248 MBNL2Q5VZF2 373 aaKnown RBP4.95□□□□□ -1.62
NUP54-212ENST00000513248 KRT40Q6A162 431 aa4.95□□□□□ -1.62
NUP54-212ENST00000513248 MAMDC4Q6UXC1 1216 aa4.95□□□□□ -1.62
NUP54-212ENST00000513248 ABHD15Q6UXT9 468 aa4.95□□□□□ -1.62
NUP54-212ENST00000513248 Q6ZSN1 163 aa4.95□□□□□ -1.62
NUP54-212ENST00000513248 GLB1L2Q8IW92 636 aa4.95□□□□□ -1.62
NUP54-212ENST00000513248 D2HGDHQ8N465 521 aa4.95□□□□□ -1.62
NUP54-212ENST00000513248 ZNF808Q8N4W9 903 aaPredicted RBP4.95□□□□□ -1.62
NUP54-212ENST00000513248 FATE1Q969F0 183 aa4.95□□□□□ -1.62
NUP54-212ENST00000513248 PAWRQ96IZ0 340 aaKnown RBP4.95□□□□□ -1.62
NUP54-212ENST00000513248 PUS7Q96PZ0 661 aaKnown RBP4.95□□□□□ -1.62
NUP54-212ENST00000513248 UIMC1Q96RL1 719 aa4.95□□□□□ -1.62
NUP54-212ENST00000513248 MPHOSPH9Q99550 1183 aa4.95□□□□□ -1.62
NUP54-212ENST00000513248 C11orf21Q9P2W6 132 aa4.95□□□□□ -1.62
NUP54-212ENST00000513248 E9PCH4 1651 aa4.95□□□□□ -1.62
NUP54-212ENST00000513248 ALDH1L1O75891 902 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 MT-CO1P00395 513 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 JUNP05412 331 aaKnown RBP4.94□□□□□ -1.62
NUP54-212ENST00000513248 LTA4HP09960 611 aaKnown RBP4.94□□□□□ -1.62
NUP54-212ENST00000513248 MYBL2P10244 700 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 MCAMP43121 646 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 SLC5A3P53794 718 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 WNT3AP56704 352 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 DPTQ07507 201 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 MGAT5Q09328 741 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 MALLQ13021 153 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 TMEM240Q5SV17 173 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 MEX3CQ5U5Q3 659 aaKnown RBP4.94□□□□□ -1.62
NUP54-212ENST00000513248 PGM2L1Q6PCE3 622 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 GLB1L3Q8NCI6 653 aaPredicted RBP4.94□□□□□ -1.62
NUP54-212ENST00000513248 SNX33Q8WV41 574 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 CHMP4CQ96CF2 233 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 CAMKK2Q96RR4 588 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 GREM2Q9H772 168 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 IL23AQ9NPF7 189 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 ING3Q9NXR8 418 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 CCDC144AA2RUR9 1427 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 ZFYVE9O95405 1425 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 SETD5Q9C0A6 1442 aa4.94□□□□□ -1.62
NUP54-212ENST00000513248 KDM5AP29375 1690 aaKnown RBP4.93□□□□□ -1.62
NUP54-212ENST00000513248 KLHL33A6NCF5 533 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 ABLIM3O94929 683 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 ZNF202O95125 648 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 OSMP13725 252 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 C5AR1P21730 350 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 XPAP23025 273 aaPredicted RBP4.93□□□□□ -1.62
NUP54-212ENST00000513248 MCM7P33993 719 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 NRG3P56975 720 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 HHEXQ03014 270 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 TTF1Q15361 905 aaPredicted RBP4.93□□□□□ -1.62
NUP54-212ENST00000513248 PTPN21Q16825 1174 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 MST1LQ2TV78 715 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 Q6ZVL8 140 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 CMTR2Q8IYT2 770 aaKnown RBP4.93□□□□□ -1.62
NUP54-212ENST00000513248 CHFRQ96EP1 664 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 TEKT5Q96M29 485 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 TLR9Q9NR96 1032 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 STK26Q9P289 416 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 NCDNQ9UBB6 729 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 RCAN3Q9UKA8 241 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 TMEM131LA2VDJ0 1609 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 NKTRP30414 1462 aaKnown RBP4.93□□□□□ -1.62
NUP54-212ENST00000513248 RPGRIP1LQ68CZ1 1315 aa4.93□□□□□ -1.62
NUP54-212ENST00000513248 TRPM2O94759 1503 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 PIK3R4Q99570 1358 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 UBE2QL1A1L167 161 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 CAPN14A8MX76 684 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 NARSO43776 548 aaKnown RBP4.92□□□□□ -1.62
NUP54-212ENST00000513248 ALDH1A2O94788 518 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 EDNRBP24530 442 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 CDK17Q00537 523 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 PTH1RQ03431 593 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 MGAT2Q10469 447 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 NRN1LQ496H8 165 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 LMBR1LQ6UX01 489 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 SGMS1Q86VZ5 419 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 ZNF575Q86XF7 245 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 RAVER1Q8IY67 606 aaKnown RBP4.92□□□□□ -1.62
NUP54-212ENST00000513248 CPA6Q8N4T0 437 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 GPR156Q8NFN8 814 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 OR2I1PQ8NGU4 316 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 RIN2Q8WYP3 895 aaPredicted RBP4.92□□□□□ -1.62
NUP54-212ENST00000513248 SLC2A13Q96QE2 648 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 TCF25Q9BQ70 676 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 ACE2Q9BYF1 805 aaPredicted RBP4.92□□□□□ -1.62
NUP54-212ENST00000513248 MKS1Q9NXB0 559 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 SH3BP1Q9Y3L3 701 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 IPPQ9Y573 584 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 RPTORQ8N122 1335 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 SPHKAPQ2M3C7 1700 aa4.92□□□□□ -1.62
NUP54-212ENST00000513248 RAB3GAP2Q9H2M9 1393 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 SRCAPQ6ZRS2 3230 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 DIP2AQ14689 1571 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 ADAMTS13Q76LX8 1427 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 WNT10BO00744 389 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 NDUFS2O75306 463 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 ACRV1P26436 265 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 HIBADHP31937 336 aaKnown RBP4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms