RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ARHGEF17Q96PE2 2063 aaPredicted RBP4.13□□□□□ -1.75
NUP54-208ENST00000508604 CCDC151A5D8V7 595 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 C1QL1O75973 258 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 ZFPL1O95159 310 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 GCSHP23434 173 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 KRTAP10-9P60411 292 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 PCBP1Q15365 356 aaKnown RBP eCLIP4.13□□□□□ -1.75
NUP54-208ENST00000508604 C21orf62-AS1Q17RA5 79 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 GPR156Q8NFN8 814 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 RIN2Q8WYP3 895 aaPredicted RBP4.13□□□□□ -1.75
NUP54-208ENST00000508604 C1QTNF7Q9BXJ2 289 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 ARPP21Q9UBL0 812 aaPredicted RBP4.13□□□□□ -1.75
NUP54-208ENST00000508604 CD2APQ9Y5K6 639 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 ALOX15P16050 662 aaPredicted RBP4.13□□□□□ -1.75
NUP54-208ENST00000508604 GPD1P21695 349 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 VAV2P52735 878 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 UBXN2BQ14CS0 331 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 CYP2A13Q16696 494 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 AFMIDQ63HM1 303 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 ZNF788Q6ZQV5 615 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 NIM1KQ8IY84 436 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 ACAP3Q96P50 834 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 SENP6Q9GZR1 1112 aaPredicted RBP4.13□□□□□ -1.75
NUP54-208ENST00000508604 ZSWIM4Q9H7M6 989 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 KANSL2Q9H9L4 492 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 EMC7Q9NPA0 242 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 ZBTB21Q9ULJ3 1066 aa4.13□□□□□ -1.75
NUP54-208ENST00000508604 TRGV11A0A075B6L2 103 aa4.12□□□□□ -1.75
NUP54-208ENST00000508604 TEX33O43247 280 aa4.12□□□□□ -1.75
NUP54-208ENST00000508604 CKBP12277 381 aa4.12□□□□□ -1.75
NUP54-208ENST00000508604 ALAS1P13196 640 aa4.12□□□□□ -1.75
NUP54-208ENST00000508604 ADCYAP1R1P41586 468 aa4.12□□□□□ -1.75
NUP54-208ENST00000508604 CDK17Q00537 523 aa4.12□□□□□ -1.75
NUP54-208ENST00000508604 MAPK7Q13164 816 aa4.12□□□□□ -1.75
NUP54-208ENST00000508604 SRSF7Q16629 238 aaKnown RBP eCLIP4.12□□□□□ -1.75
NUP54-208ENST00000508604 LNX2Q8N448 690 aa4.12□□□□□ -1.75
NUP54-208ENST00000508604 SH2D3CQ8N5H7 860 aa4.12□□□□□ -1.75
NUP54-208ENST00000508604 ZNF366Q8N895 744 aa4.12□□□□□ -1.75
NUP54-208ENST00000508604 EAF2Q96CJ1 260 aaPredicted RBP4.12□□□□□ -1.75
NUP54-208ENST00000508604 UNKLQ9H9P5 680 aaKnown RBP4.12□□□□□ -1.75
NUP54-208ENST00000508604 CPNE5Q9HCH3 593 aa4.12□□□□□ -1.75
NUP54-208ENST00000508604 IL17RBQ9NRM6 502 aa4.12□□□□□ -1.75
NUP54-208ENST00000508604 LANCL2Q9NS86 450 aa4.12□□□□□ -1.75
NUP54-208ENST00000508604 PNPLA7Q6ZV29 1317 aa4.12□□□□□ -1.75
NUP54-208ENST00000508604 AATKQ6ZMQ8 1374 aa4.12□□□□□ -1.75
NUP54-208ENST00000508604 COL3A1P02461 1466 aaPredicted RBP4.11□□□□□ -1.75
NUP54-208ENST00000508604 FOLR3P41439 243 aa4.11□□□□□ -1.75
NUP54-208ENST00000508604 EZH2Q15910 746 aaKnown RBP4.11□□□□□ -1.75
NUP54-208ENST00000508604 FSCN1Q16658 493 aaKnown RBP4.11□□□□□ -1.75
NUP54-208ENST00000508604 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.11□□□□□ -1.75
NUP54-208ENST00000508604 ATP13A4Q4VNC1 1196 aa4.11□□□□□ -1.75
NUP54-208ENST00000508604 C16orf86Q6ZW13 317 aa4.11□□□□□ -1.75
NUP54-208ENST00000508604 PQLC1Q8N2U9 271 aa4.11□□□□□ -1.75
NUP54-208ENST00000508604 FBXO18Q8NFZ0 1043 aa4.11□□□□□ -1.75
NUP54-208ENST00000508604 APPBP2Q92624 585 aa4.11□□□□□ -1.75
NUP54-208ENST00000508604 ZNF778Q96MU6 729 aa4.11□□□□□ -1.75
NUP54-208ENST00000508604 MED15Q96RN5 788 aa4.11□□□□□ -1.75
NUP54-208ENST00000508604 PNKPQ96T60 521 aa4.11□□□□□ -1.75
NUP54-208ENST00000508604 PRDM12Q9H4Q4 367 aa4.11□□□□□ -1.75
NUP54-208ENST00000508604 TMEM140Q9NV12 185 aa4.11□□□□□ -1.75
NUP54-208ENST00000508604 FAM30AQ9NZY2 134 aa4.11□□□□□ -1.75
NUP54-208ENST00000508604 DPP7Q9UHL4 492 aa4.11□□□□□ -1.75
NUP54-208ENST00000508604 USP25Q9UHP3 1055 aa4.11□□□□□ -1.75
NUP54-208ENST00000508604 SOX10P56693 466 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 KAZNQ674X7 775 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 ZNF529Q6P280 563 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 C1QL2Q7Z5L3 287 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 SSH3Q8TE77 659 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 FATE1Q969F0 183 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 NACC2Q96BF6 587 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 TIMP4Q99727 224 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.1□□□□□ -1.75
NUP54-208ENST00000508604 WDR91A4D1P6 747 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 FAM83GA6ND36 823 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 MTHFD2P13995 350 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 SEPT7Q16181 437 aaKnown RBP4.1□□□□□ -1.75
NUP54-208ENST00000508604 OTUD7BQ6GQQ9 843 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 DHX37Q8IY37 1157 aaKnown RBP4.1□□□□□ -1.75
NUP54-208ENST00000508604 FITM2Q8N6M3 262 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 HASPINQ8TF76 798 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 AUTS2Q8WXX7 1259 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 USP7Q93009 1102 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 TARS2Q9BW92 718 aaKnown RBP4.1□□□□□ -1.75
NUP54-208ENST00000508604 ZNF70Q9UC06 446 aaPredicted RBP4.1□□□□□ -1.75
NUP54-208ENST00000508604 EDARQ9UNE0 448 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 ENTPD2Q9Y5L3 495 aa4.1□□□□□ -1.75
NUP54-208ENST00000508604 ATRNL1Q5VV63 1379 aa4.09□□□□□ -1.75
NUP54-208ENST00000508604 YY2O15391 372 aa4.09□□□□□ -1.76
NUP54-208ENST00000508604 ULK1O75385 1050 aa4.09□□□□□ -1.76
NUP54-208ENST00000508604 WT1P19544 449 aaPredicted RBP4.09□□□□□ -1.76
NUP54-208ENST00000508604 ENPP1P22413 925 aa4.09□□□□□ -1.76
NUP54-208ENST00000508604 SREBF1P36956 1147 aa4.09□□□□□ -1.76
NUP54-208ENST00000508604 ATP2B3Q16720 1220 aa4.09□□□□□ -1.76
NUP54-208ENST00000508604 NBPF8Q3BBV2 869 aa4.09□□□□□ -1.76
NUP54-208ENST00000508604 MUM1L1Q5H9M0 696 aa4.09□□□□□ -1.76
NUP54-208ENST00000508604 NUP133Q8WUM0 1156 aa4.09□□□□□ -1.76
NUP54-208ENST00000508604 STON2Q8WXE9 905 aa4.09□□□□□ -1.76
NUP54-208ENST00000508604 SARAFQ96BY9 339 aa4.09□□□□□ -1.76
NUP54-208ENST00000508604 FBXL20Q96IG2 436 aa4.09□□□□□ -1.76
NUP54-208ENST00000508604 RBM12Q9NTZ6 932 aaKnown RBP4.09□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms