RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 CXCL16Q9H2A7 254 aa19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 FNIP2Q9P278 1114 aa19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 ARHGAP28Q9P2N2 729 aa19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 KCNH3Q9ULD8 1083 aa19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 CCDC195A0A1B0GUA6 201 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 SLC16A4O15374 487 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 SLC26A4O43511 780 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 PLA2G4BP0C869 781 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 SPATA31D3P0C874 917 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 RPL17P18621 184 aaKnown RBP19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 OSTNP61366 133 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 STRN3Q13033 797 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 GLRA4Q5JXX5 417 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 SPECC1Q5M775 1068 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 FAM171A1Q5VUB5 890 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 SPATA31D4Q6ZUB0 917 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 OTOP3Q7RTS5 596 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 SYT2Q8N9I0 419 aaPredicted RBP19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 FEZF2Q8TBJ5 459 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 TIGD1Q96MW7 591 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 TTPALQ9BTX7 342 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 TARS2Q9BW92 718 aaKnown RBP19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 NUP62CLQ9H1M0 184 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 CLSTN2Q9H4D0 955 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 TOPORSQ9NS56 1045 aaPredicted RBP19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 TMEM63CQ9P1W3 806 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 LIMD1Q9UGP4 676 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 SORCS3Q9UPU3 1222 aa19.7■□□□□ 0.74
SQSTM1-209ENST00000504627 TGM5O43548 720 aa19.69■□□□□ 0.74
SQSTM1-209ENST00000504627 UBA7P41226 1012 aa19.69■□□□□ 0.74
SQSTM1-209ENST00000504627 ELAVL2Q12926 359 aaKnown RBP19.69■□□□□ 0.74
SQSTM1-209ENST00000504627 MAPK7Q13164 816 aa19.69■□□□□ 0.74
SQSTM1-209ENST00000504627 RTP2Q5QGT7 225 aa19.69■□□□□ 0.74
SQSTM1-209ENST00000504627 ZDHHC14Q8IZN3 488 aa19.69■□□□□ 0.74
SQSTM1-209ENST00000504627 CEP120Q8N960 986 aa19.69■□□□□ 0.74
SQSTM1-209ENST00000504627 CMASQ8NFW8 434 aaPredicted RBP19.69■□□□□ 0.74
SQSTM1-209ENST00000504627 RASSF8Q8NHQ8 419 aa19.69■□□□□ 0.74
SQSTM1-209ENST00000504627 HDAC7Q8WUI4 952 aa19.69■□□□□ 0.74
SQSTM1-209ENST00000504627 CALML4Q96GE6 196 aa19.69■□□□□ 0.74
SQSTM1-209ENST00000504627 EPSTI1Q96J88 318 aa19.69■□□□□ 0.74
SQSTM1-209ENST00000504627 CDT1Q9H211 546 aa19.69■□□□□ 0.74
SQSTM1-209ENST00000504627 KCNH6Q9H252 994 aa19.69■□□□□ 0.74
SQSTM1-209ENST00000504627 PLEKHA4Q9H4M7 779 aa19.69■□□□□ 0.74
SQSTM1-209ENST00000504627 KCND2Q9NZV8 630 aa19.69■□□□□ 0.74
SQSTM1-209ENST00000504627 USP25Q9UHP3 1055 aa19.69■□□□□ 0.74
SQSTM1-209ENST00000504627 RFPL2O75678 378 aa19.68■□□□□ 0.74
SQSTM1-209ENST00000504627 B3GAT3O94766 335 aa19.68■□□□□ 0.74
SQSTM1-209ENST00000504627 ZNF202O95125 648 aa19.68■□□□□ 0.74
SQSTM1-209ENST00000504627 HARSP12081 509 aaKnown RBP19.68■□□□□ 0.74
SQSTM1-209ENST00000504627 PLS3P13797 630 aa19.68■□□□□ 0.74
SQSTM1-209ENST00000504627 GRM5P41594 1212 aa19.68■□□□□ 0.74
SQSTM1-209ENST00000504627 SLC12A3P55017 1021 aa19.68■□□□□ 0.74
SQSTM1-209ENST00000504627 NAB2Q15742 525 aa19.68■□□□□ 0.74
SQSTM1-209ENST00000504627 PRSS55Q6UWB4 352 aaPredicted RBP19.68■□□□□ 0.74
SQSTM1-209ENST00000504627 CYP26C1Q6V0L0 522 aa19.68■□□□□ 0.74
SQSTM1-209ENST00000504627 USP49Q70CQ1 688 aa19.68■□□□□ 0.74
SQSTM1-209ENST00000504627 TAS1R3Q7RTX0 852 aa19.68■□□□□ 0.74
SQSTM1-209ENST00000504627 UBALD2Q8IYN6 164 aa19.68■□□□□ 0.74
SQSTM1-209ENST00000504627 SPIRE2Q8WWL2 714 aa19.68■□□□□ 0.74
SQSTM1-209ENST00000504627 PIDD1Q9HB75 910 aa19.68■□□□□ 0.74
SQSTM1-209ENST00000504627 C1RP00736 705 aa19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 ASGR2P07307 311 aa19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 MCF2P10911 925 aa19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 CACNB1Q02641 598 aaPredicted RBP19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 PSMD5Q16401 504 aa19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 TMEM119Q4V9L6 283 aa19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 PDXDC1Q6P996 788 aa19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 DCLRE1AQ6PJP8 1040 aa19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 MPZL3Q6UWV2 235 aa19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 FBXL6Q8N531 539 aa19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 SMG7Q92540 1137 aaKnown RBP19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 STAMQ92783 540 aa19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 ASIC4Q96FT7 647 aa19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 CCDC34Q96HJ3 373 aa19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 UROC1Q96N76 676 aa19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 ACAP3Q96P50 834 aa19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 PPP1R10Q96QC0 940 aaKnown RBP19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 NTPCRQ9BSD7 190 aaKnown RBP19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 PTPRHQ9HD43 1115 aa19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 LARSQ9P2J5 1176 aaKnown RBP19.67■□□□□ 0.74
SQSTM1-209ENST00000504627 MUC6Q6W4X9 2439 aa19.66■□□□□ 0.74
SQSTM1-209ENST00000504627 SMIM28A0A1B0GU29 152 aa19.66■□□□□ 0.74
SQSTM1-209ENST00000504627 MATR3P43243 847 aaKnown RBP eCLIP19.66■□□□□ 0.74
SQSTM1-209ENST00000504627 CLCNKBP51801 687 aa19.66■□□□□ 0.74
SQSTM1-209ENST00000504627 DHX8Q14562 1220 aaKnown RBP19.66■□□□□ 0.74
SQSTM1-209ENST00000504627 ELOA2Q8IYF1 753 aaPredicted RBP19.66■□□□□ 0.74
SQSTM1-209ENST00000504627 LNX1Q8TBB1 728 aaPredicted RBP19.66■□□□□ 0.74
SQSTM1-209ENST00000504627 PIK3R5Q8WYR1 880 aa19.66■□□□□ 0.74
SQSTM1-209ENST00000504627 GOLGA2P5Q9HBQ8 144 aa19.66■□□□□ 0.74
SQSTM1-209ENST00000504627 SLC38A7Q9NVC3 462 aa19.66■□□□□ 0.74
SQSTM1-209ENST00000504627 ANKFY1Q9P2R3 1169 aa19.66■□□□□ 0.74
SQSTM1-209ENST00000504627 CCDC39Q9UFE4 941 aa19.66■□□□□ 0.74
SQSTM1-209ENST00000504627 NPHP3-ACAD11A0A0J9YXS1 232 aa19.65■□□□□ 0.74
SQSTM1-209ENST00000504627 H0YCG3 227 aa19.65■□□□□ 0.74
SQSTM1-209ENST00000504627 POLR2DO15514 142 aaKnown RBP19.65■□□□□ 0.74
SQSTM1-209ENST00000504627 TRAPPC3O43617 180 aa19.65■□□□□ 0.74
SQSTM1-209ENST00000504627 LETM1O95202 739 aaPredicted RBP19.65■□□□□ 0.74
SQSTM1-209ENST00000504627 GBP2P32456 591 aaPredicted RBP19.65■□□□□ 0.74
SQSTM1-209ENST00000504627 ZSCAN23Q3MJ62 389 aa19.65■□□□□ 0.74
SQSTM1-209ENST00000504627 LILRA6Q6PI73 481 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms