RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 ARL13BQ3SXY8 428 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 DACT2Q5SW24 774 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 CFAP61Q8NHU2 1237 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 TMC2Q8TDI7 906 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 TRIM55Q9BYV6 548 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 PPCSQ9HAB8 311 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 LAMB4A4D0S4 1761 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 GOLGA8QA0A0J9YX86 632 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 GOLGA8OA6NCC3 632 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 GOLGA8NF8WBI6 632 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 GOLGA8MH3BSY2 632 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 KRT38O76015 456 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 MAPK7Q13164 816 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 FASTKD5Q7L8L6 764 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 TBC1D1Q86TI0 1168 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 FAM83AQ86UY5 434 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 WDR91A4D1P6 747 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 SLITRK3O94933 977 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 KRT3P12035 628 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 DPEP1P16444 411 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 NOP14P78316 857 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 ASPHQ12797 758 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 PPP6R3Q5H9R7 873 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 SLC13A5Q86YT5 568 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 DNAAF3Q8N9W5 541 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 TTC16Q8NEE8 873 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 DHX38Q92620 1227 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 HAS1Q92839 578 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 OTUD5Q96G74 571 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 PRMT1Q99873 361 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 PCSK1NQ9UHG2 260 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 CFAP73A6NFT4 308 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 IL18RAPO95256 599 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 GARTP22102 1010 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 SPDYE2Q495Y8 402 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 FAM102AQ5T9C2 384 aaPredicted RBP11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 KDM4FA0A1W2PPD8 638 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 SGPL1O95470 568 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 SSTR3P32745 418 aaPredicted RBP11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 EVX2Q03828 476 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 HIF1AQ16665 826 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 P3H1Q32P28 736 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 TMEM139Q8IV31 216 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 CDKL3Q8IVW4 592 aaPredicted RBP11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 C3orf20Q8ND61 904 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 C18orf8Q96DM3 657 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 XPO6Q96QU8 1125 aaKnown RBP11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 GCOM2Q9BZD3 368 aaPredicted RBP11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 FAM49AQ9H0Q0 323 aaPredicted RBP11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 DEFB129Q9H1M3 183 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 MID2Q9UJV3 735 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 PSTPIP1O43586 416 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 ACTR2P61160 394 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 PTGISQ16647 500 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 NXNQ6DKJ4 435 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 C11orf63Q6NUN7 778 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 LRRC55Q6ZSA7 311 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 RAPH1Q70E73 1250 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 SMARCAD1Q9H4L7 1026 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 C5P01031 1676 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 CDH16O75309 829 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 GABPAQ06546 454 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 ITKQ08881 620 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 E2F5Q15329 346 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 STILQ15468 1287 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 TRIM68Q6AZZ1 485 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 WDR59Q6PJI9 974 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 CBWD1Q9BRT8 395 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 PXMP2Q9NR77 195 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 ZNF446Q9NWS9 450 aa11.4□□□□□ -0.58
LIMCH1-205ENST00000503057 SASH3O75995 380 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 NPTX2P47972 431 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 RCN2Q14257 317 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 EZH2Q15910 746 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 SLC35C1Q96A29 364 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 FAM193BQ96PV7 902 aaPredicted RBP11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 OSBPL8Q9BZF1 889 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 DMGDHQ9UI17 866 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 PPP1R9AQ9ULJ8 1098 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 TPX2Q9ULW0 747 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 VGLL3A8MV65 326 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 CHUKO15111 745 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 ASAP2O43150 1006 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 FAM107AO95990 144 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 ZFXP17010 805 aaPredicted RBP11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 GMPSP49915 693 aaPredicted RBP11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 LRRC14Q15048 493 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 CRY2Q49AN0 593 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 IER5Q5VY09 327 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 LRRC31Q6UY01 552 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 FAM47EQ6ZV65 393 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 CREG2Q8IUH2 290 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 DNAJC19Q96DA6 116 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 MCEEQ96PE7 176 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 KIFC3Q9BVG8 833 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 TLR10Q9BXR5 811 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 SMG5Q9UPR3 1016 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 HEY1Q9Y5J3 304 aa11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-205ENST00000503057 TOM1L1O75674 476 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms