RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 ZEB2O60315 1214 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 TNNI1P19237 187 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 NR1D1P20393 614 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 CDR1P51861 262 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 EFNA5P52803 228 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 GRM1Q13255 1194 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 CYP1B1Q16678 543 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 CEP85LQ5SZL2 805 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 AGBL2Q5U5Z8 902 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 CYP4F22Q6NT55 531 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 LRRC31Q6UY01 552 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 ZPBP2Q6X784 338 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 CYFIP1Q7L576 1253 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 TAS1R3Q7RTX0 852 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 TMC3Q7Z5M5 1100 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 SAPCD2Q86UD0 394 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 PROCA1Q8NCQ7 364 aaPredicted RBP12.83□□□□□ -0.36
NUP54-202ENST00000502850 PIK3R5Q8WYR1 880 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 DDX1Q92499 740 aaKnown RBP12.83□□□□□ -0.36
NUP54-202ENST00000502850 ALG3Q92685 438 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 CD101Q93033 1021 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 CEP89Q96ST8 783 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 CGRRF1Q99675 332 aa12.83□□□□□ -0.36
NUP54-202ENST00000502850 RBAKQ9NYW8 714 aaPredicted RBP12.83□□□□□ -0.36
NUP54-202ENST00000502850 CNOT8Q9UFF9 292 aaKnown RBP12.83□□□□□ -0.36
NUP54-202ENST00000502850 MTRF1LQ9UGC7 380 aaKnown RBP12.83□□□□□ -0.36
NUP54-202ENST00000502850 LRRIQ4A6NIV6 560 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 TMEM110-MUSTN1A8MSY1 372 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 KRT14P02533 472 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 EDNRBP24530 442 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 NSFP46459 744 aaKnown RBP12.82□□□□□ -0.36
NUP54-202ENST00000502850 CTCFP49711 727 aaPredicted RBP12.82□□□□□ -0.36
NUP54-202ENST00000502850 PEX5P50542 639 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 IRAK1P51617 712 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 GNGT1P63211 74 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 SURF1Q15526 300 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 LIN9Q5TKA1 542 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 DUPD1Q68J44 220 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 HOOK3Q86VS8 718 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 JAMLQ86YT9 394 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 C12orf50Q8NA57 414 aaPredicted RBP12.82□□□□□ -0.36
NUP54-202ENST00000502850 UBLCP1Q8WVY7 318 aaPredicted RBP12.82□□□□□ -0.36
NUP54-202ENST00000502850 TCP11Q8WWU5 503 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 ARL8AQ96BM9 186 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 VCPIP1Q96JH7 1222 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 POP1Q99575 1024 aaKnown RBP12.82□□□□□ -0.36
NUP54-202ENST00000502850 JPH2Q9BR39 696 aaPredicted RBP12.82□□□□□ -0.36
NUP54-202ENST00000502850 MSTO1Q9BUK6 570 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 IMPG2Q9BZV3 1241 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 PLEKHA4Q9H4M7 779 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 TMBIM4Q9HC24 238 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 TOPORSQ9NS56 1045 aaPredicted RBP12.82□□□□□ -0.36
NUP54-202ENST00000502850 SNCAIPQ9Y6H5 919 aa12.82□□□□□ -0.36
NUP54-202ENST00000502850 LOC102724159A0A0B4J2E5 919 aa12.81□□□□□ -0.36
NUP54-202ENST00000502850 PPFIA2O75334 1257 aa12.81□□□□□ -0.36
NUP54-202ENST00000502850 SLC25A27O95847 323 aa12.81□□□□□ -0.36
NUP54-202ENST00000502850 HLA-DRAP01903 254 aa12.81□□□□□ -0.36
NUP54-202ENST00000502850 C4BPAP04003 597 aaKnown RBP12.81□□□□□ -0.36
NUP54-202ENST00000502850 UBA1P22314 1058 aaKnown RBP12.81□□□□□ -0.36
NUP54-202ENST00000502850 GLRA2P23416 452 aa12.81□□□□□ -0.36
NUP54-202ENST00000502850 MAPK4P31152 587 aa12.81□□□□□ -0.36
NUP54-202ENST00000502850 CENPCQ03188 943 aa12.81□□□□□ -0.36
NUP54-202ENST00000502850 PWP2Q15269 919 aaKnown RBP12.81□□□□□ -0.36
NUP54-202ENST00000502850 DLK2Q6UY11 383 aa12.81□□□□□ -0.36
NUP54-202ENST00000502850 SYDE1Q6ZW31 735 aaPredicted RBP12.81□□□□□ -0.36
NUP54-202ENST00000502850 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.81□□□□□ -0.36
NUP54-202ENST00000502850 SPATS2Q86XZ4 545 aaKnown RBP12.81□□□□□ -0.36
NUP54-202ENST00000502850 SLC13A5Q86YT5 568 aaPredicted RBP12.81□□□□□ -0.36
NUP54-202ENST00000502850 MAGOHBQ96A72 148 aaKnown RBP12.81□□□□□ -0.36
NUP54-202ENST00000502850 HHIPL1Q96JK4 782 aa12.81□□□□□ -0.36
NUP54-202ENST00000502850 AZI2Q9H6S1 392 aa12.81□□□□□ -0.36
NUP54-202ENST00000502850 MRPL47Q9HD33 250 aaKnown RBP12.81□□□□□ -0.36
NUP54-202ENST00000502850 SCINQ9Y6U3 715 aa12.81□□□□□ -0.36
NUP54-202ENST00000502850 A0A0B4J269 797 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 ADCY3O60266 1144 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 USP2O75604 605 aaPredicted RBP12.8□□□□□ -0.36
NUP54-202ENST00000502850 FARP2O94887 1054 aaPredicted RBP12.8□□□□□ -0.36
NUP54-202ENST00000502850 UNGP13051 313 aaPredicted RBP12.8□□□□□ -0.36
NUP54-202ENST00000502850 IREB2P48200 963 aaKnown RBP12.8□□□□□ -0.36
NUP54-202ENST00000502850 SOX10P56693 466 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 IRX3P78415 501 aaPredicted RBP12.8□□□□□ -0.36
NUP54-202ENST00000502850 DHX9Q08211 1270 aaKnown RBP12.8□□□□□ -0.36
NUP54-202ENST00000502850 ZNF211Q13398 564 aaPredicted RBP12.8□□□□□ -0.36
NUP54-202ENST00000502850 CUL2Q13617 745 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 VGLL4Q14135 290 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 NAA35Q5VZE5 725 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 METTL7BQ6UX53 244 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 SEPT14Q6ZU15 432 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 ZBTB8OSQ8IWT0 167 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 SULF1Q8IWU6 871 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 ASAP3Q8TDY4 903 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 SEPT1Q8WYJ6 367 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 KRT35Q92764 455 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 TATDN2Q93075 761 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 CELF4Q9BZC1 486 aaKnown RBP12.8□□□□□ -0.36
NUP54-202ENST00000502850 SPATC1LQ9H0A9 340 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 C2orf40Q9H1Z8 148 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 DPH5Q9H2P9 285 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 HOMER3Q9NSC5 361 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 FEZ2Q9UHY8 353 aaPredicted RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms