RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 MRPL40Q9NQ50 206 aaKnown RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 PKD2L1Q9P0L9 805 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 CCDC160A6NGH7 325 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 LAD1O00515 517 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 THAP12O43422 761 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 OPA1O60313 960 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 BAG2O95816 211 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 CYBAP13498 195 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 PHBP35232 272 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 SERPINB4P48594 390 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 RPS6KA3P51812 740 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 WDR5P61964 334 aaKnown RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 CXADRP78310 365 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 NOP14P78316 857 aaKnown RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 KRT85P78386 507 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 VAC14Q08AM6 782 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 ZNF423Q2M1K9 1284 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 TWISTNBQ3B726 338 aaPredicted RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 FBXO16Q8IX29 292 aaPredicted RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 SYCP3Q8IZU3 236 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 FBF1Q8TES7 1133 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 ZFPM2Q8WW38 1151 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 NXPE3Q969Y0 559 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 VPS45Q9NRW7 570 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 RBPJLQ9UBG7 517 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 AKT3Q9Y243 479 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 NHSQ6T4R5 1651 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 GRM8O00222 908 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 BIN1O00499 593 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 BCAR3O75815 825 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 RPP40O75818 363 aaKnown RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 IGHDP01880 384 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 IQCF3P0C7M6 154 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 MX1P20591 662 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 PDCP20941 246 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 TRPC1P48995 793 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 STX17P56962 302 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 BFSP1Q12934 665 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 KARSQ15046 597 aaKnown RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 OASLQ15646 514 aaKnown RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 CCDC6Q16204 474 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 FXNQ16595 210 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 SH3PXD2AQ5TCZ1 1133 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 RNF207Q6ZRF8 634 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 INTS8Q75QN2 995 aaKnown RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 ANKRD33Q7Z3H0 272 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 RABEPKQ7Z6M1 372 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 FAM160B2Q86V87 743 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 SLC44A2Q8IWA5 706 aaPredicted RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 CCHCR1Q8TD31 782 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 VTI1BQ9UEU0 232 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 MOSPD1Q9UJG1 213 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 IPPQ9Y573 584 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 CAPN7Q9Y6W3 813 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 CNTRLQ7Z7A1 2325 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 SRGAP3O43295 1099 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 IL15P40933 162 aaPredicted RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 NFATC3Q12968 1075 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 ARHGAP44Q17R89 818 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 TCERG1LQ5VWI1 586 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 SPATA1Q5VX52 437 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 SLFN13Q68D06 897 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 LRRC47Q8N1G4 583 aaKnown RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 PPHLN1Q8NEY8 458 aaKnown RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 TSR2Q969E8 191 aaKnown RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 WDR18Q9BV38 432 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 PLVAPQ9BX97 442 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 POLG2Q9UHN1 485 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 DNAI1Q9UI46 699 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 FNDC3AQ9Y2H6 1198 aaKnown RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 GPSM3Q9Y4H4 160 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 LMO7Q8WWI1 1683 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 AK9Q5TCS8 1911 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 H3BNC9 293 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 GAS2O43903 313 aaKnown RBP5.46□□□□□ -1.53
USP54-216ENST00000498143 MYBL2P10244 700 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 ATF7P17544 494 aaPredicted RBP5.46□□□□□ -1.53
USP54-216ENST00000498143 PRDX5P30044 214 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 MAPK9P45984 424 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 LIG3P49916 1009 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 RASGRF1Q13972 1273 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 LY6DQ14210 128 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 C15orf59Q2T9L4 293 aaPredicted RBP5.46□□□□□ -1.53
USP54-216ENST00000498143 MUM1L1Q5H9M0 696 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 CFAP157Q5JU67 520 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 RAPH1Q70E73 1250 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 RALYLQ86SE5 291 aaKnown RBP5.46□□□□□ -1.53
USP54-216ENST00000498143 MFN1Q8IWA4 741 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.46□□□□□ -1.53
USP54-216ENST00000498143 LEO1Q8WVC0 666 aaPredicted RBP5.46□□□□□ -1.53
USP54-216ENST00000498143 ZBTB10Q96DT7 871 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 STMN4Q9H169 189 aaPredicted RBP5.46□□□□□ -1.53
USP54-216ENST00000498143 RETREG1Q9H6L5 497 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 COPRSQ9NQ92 184 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 TMEM63CQ9P1W3 806 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 TBX21Q9UL17 535 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 ZNF232Q9UNY5 417 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 WBP11Q9Y2W2 641 aaKnown RBP5.46□□□□□ -1.53
USP54-216ENST00000498143 FPGT-TNNI3KV9GXZ4 949 aa5.46□□□□□ -1.53
USP54-216ENST00000498143 A0A1W2PRQ8 180 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms