RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 TSHZ2Q9NRE2 1034 aa21.22■□□□□ 0.99
USP40-217ENST00000496298 HCN4Q9Y3Q4 1203 aa21.22■□□□□ 0.99
USP40-217ENST00000496298 CCDC195A0A1B0GUA6 201 aa21.21■□□□□ 0.99
USP40-217ENST00000496298 CLDN3O15551 220 aa21.21■□□□□ 0.99
USP40-217ENST00000496298 STX6O43752 255 aa21.21■□□□□ 0.99
USP40-217ENST00000496298 B3GAT3O94766 335 aa21.21■□□□□ 0.99
USP40-217ENST00000496298 PIGRP01833 764 aa21.21■□□□□ 0.99
USP40-217ENST00000496298 RPL17P18621 184 aaKnown RBP21.21■□□□□ 0.99
USP40-217ENST00000496298 SP100P23497 879 aaPredicted RBP21.21■□□□□ 0.99
USP40-217ENST00000496298 DHX8Q14562 1220 aaKnown RBP21.21■□□□□ 0.99
USP40-217ENST00000496298 SLC39A14Q15043 492 aa21.21■□□□□ 0.99
USP40-217ENST00000496298 PSMD5Q16401 504 aa21.21■□□□□ 0.99
USP40-217ENST00000496298 SLC10A6Q3KNW5 377 aa21.21■□□□□ 0.99
USP40-217ENST00000496298 ZNF707Q96C28 371 aaPredicted RBP21.21■□□□□ 0.99
USP40-217ENST00000496298 FIZ1Q96SL8 496 aa21.21■□□□□ 0.99
USP40-217ENST00000496298 HAPLN2Q9GZV7 340 aa21.21■□□□□ 0.99
USP40-217ENST00000496298 PARVGQ9HBI0 331 aa21.21■□□□□ 0.99
USP40-217ENST00000496298 GOLGA2P5Q9HBQ8 144 aa21.21■□□□□ 0.99
USP40-217ENST00000496298 ZDHHC7Q9NXF8 308 aa21.21■□□□□ 0.99
USP40-217ENST00000496298 TBX20Q9UMR3 447 aa21.21■□□□□ 0.99
USP40-217ENST00000496298 TMEM221A6NGB7 291 aa21.2■□□□□ 0.98
USP40-217ENST00000496298 SPDYE4A6NLX3 237 aa21.2■□□□□ 0.98
USP40-217ENST00000496298 M0R296 226 aa21.2■□□□□ 0.98
USP40-217ENST00000496298 FAM13AO94988 1023 aa21.2■□□□□ 0.98
USP40-217ENST00000496298 SPATA31D3P0C874 917 aa21.2■□□□□ 0.98
USP40-217ENST00000496298 SIGLEC14Q08ET2 396 aa21.2■□□□□ 0.98
USP40-217ENST00000496298 SPECC1Q5M775 1068 aa21.2■□□□□ 0.98
USP40-217ENST00000496298 SPATA31D4Q6ZUB0 917 aa21.2■□□□□ 0.98
USP40-217ENST00000496298 CEP57Q86XR8 500 aa21.2■□□□□ 0.98
USP40-217ENST00000496298 MYCT1Q8N699 235 aa21.2■□□□□ 0.98
USP40-217ENST00000496298 TDRD5Q8NAT2 981 aaKnown RBP21.2■□□□□ 0.98
USP40-217ENST00000496298 KREMEN2Q8NCW0 462 aa21.2■□□□□ 0.98
USP40-217ENST00000496298 C3orf58Q8NDZ4 430 aa21.2■□□□□ 0.98
USP40-217ENST00000496298 RASSF8Q8NHQ8 419 aa21.2■□□□□ 0.98
USP40-217ENST00000496298 USP28Q96RU2 1077 aa21.2■□□□□ 0.98
USP40-217ENST00000496298 ANKFY1Q9P2R3 1169 aa21.2■□□□□ 0.98
USP40-217ENST00000496298 STK17AQ9UEE5 414 aa21.2■□□□□ 0.98
USP40-217ENST00000496298 TRAPPC3O43617 180 aa21.19■□□□□ 0.98
USP40-217ENST00000496298 TRAK2O60296 914 aa21.19■□□□□ 0.98
USP40-217ENST00000496298 RFPL2O75678 378 aa21.19■□□□□ 0.98
USP40-217ENST00000496298 RPL9P32969 192 aaKnown RBP21.19■□□□□ 0.98
USP40-217ENST00000496298 ABCD1P33897 745 aa21.19■□□□□ 0.98
USP40-217ENST00000496298 GTF2BQ00403 316 aa21.19■□□□□ 0.98
USP40-217ENST00000496298 CCDC149Q6ZUS6 474 aa21.19■□□□□ 0.98
USP40-217ENST00000496298 OTOP3Q7RTS5 596 aa21.19■□□□□ 0.98
USP40-217ENST00000496298 MFSD14AQ96MC6 490 aa21.19■□□□□ 0.98
USP40-217ENST00000496298 CLIC6Q96NY7 704 aa21.19■□□□□ 0.98
USP40-217ENST00000496298 ST6GALNAC4Q9H4F1 302 aa21.19■□□□□ 0.98
USP40-217ENST00000496298 PLEKHA5Q9HAU0 1116 aa21.19■□□□□ 0.98
USP40-217ENST00000496298 WDR6Q9NNW5 1121 aaKnown RBP21.19■□□□□ 0.98
USP40-217ENST00000496298 FOXD4L1Q9NU39 408 aa21.19■□□□□ 0.98
USP40-217ENST00000496298 CCDC39Q9UFE4 941 aa21.19■□□□□ 0.98
USP40-217ENST00000496298 FBXW11Q9UKB1 542 aa21.19■□□□□ 0.98
USP40-217ENST00000496298 SORCS3Q9UPU3 1222 aa21.19■□□□□ 0.98
USP40-217ENST00000496298 DOCK8Q8NF50 2099 aa21.18■□□□□ 0.98
USP40-217ENST00000496298 ZMYND10O75800 440 aa21.18■□□□□ 0.98
USP40-217ENST00000496298 KRT18P05783 430 aaKnown RBP21.18■□□□□ 0.98
USP40-217ENST00000496298 CLTAP09496 248 aa21.18■□□□□ 0.98
USP40-217ENST00000496298 HARSP12081 509 aaKnown RBP21.18■□□□□ 0.98
USP40-217ENST00000496298 NASPP49321 788 aaPredicted RBP21.18■□□□□ 0.98
USP40-217ENST00000496298 RAB33AQ14088 237 aa21.18■□□□□ 0.98
USP40-217ENST00000496298 GLYCTKQ8IVS8 523 aa21.18■□□□□ 0.98
USP40-217ENST00000496298 UBALD2Q8IYN6 164 aa21.18■□□□□ 0.98
USP40-217ENST00000496298 ACSF2Q96CM8 615 aaPredicted RBP21.18■□□□□ 0.98
USP40-217ENST00000496298 ASIC4Q96FT7 647 aa21.18■□□□□ 0.98
USP40-217ENST00000496298 PRKD2Q9BZL6 878 aa21.18■□□□□ 0.98
USP40-217ENST00000496298 MTRRQ9UBK8 725 aa21.18■□□□□ 0.98
USP40-217ENST00000496298 LIMD1Q9UGP4 676 aa21.18■□□□□ 0.98
USP40-217ENST00000496298 BACE2Q9Y5Z0 518 aa21.18■□□□□ 0.98
USP40-217ENST00000496298 TTC26A0AVF1 554 aa21.17■□□□□ 0.98
USP40-217ENST00000496298 PODXLO00592 558 aa21.17■□□□□ 0.98
USP40-217ENST00000496298 ADAM12O43184 909 aa21.17■□□□□ 0.98
USP40-217ENST00000496298 FAM189A1O60320 539 aa21.17■□□□□ 0.98
USP40-217ENST00000496298 ADRB2P07550 413 aa21.17■□□□□ 0.98
USP40-217ENST00000496298 CEBPZQ03701 1054 aaKnown RBP21.17■□□□□ 0.98
USP40-217ENST00000496298 KYAT1Q16773 422 aa21.17■□□□□ 0.98
USP40-217ENST00000496298 SEZ6Q53EL9 994 aa21.17■□□□□ 0.98
USP40-217ENST00000496298 SMG7Q92540 1137 aaKnown RBP21.17■□□□□ 0.98
USP40-217ENST00000496298 C18orf25Q96B23 403 aaPredicted RBP21.17■□□□□ 0.98
USP40-217ENST00000496298 KCNH6Q9H252 994 aa21.17■□□□□ 0.98
USP40-217ENST00000496298 DOCK6Q96HP0 2047 aa21.17■□□□□ 0.98
USP40-217ENST00000496298 A0A0B4J269 797 aa21.16■□□□□ 0.98
USP40-217ENST00000496298 K7ENM7 598 aa21.16■□□□□ 0.98
USP40-217ENST00000496298 TBCAO75347 108 aaKnown RBP21.16■□□□□ 0.98
USP40-217ENST00000496298 TKTP29401 623 aaKnown RBP21.16■□□□□ 0.98
USP40-217ENST00000496298 PLA2G5P39877 138 aa21.16■□□□□ 0.98
USP40-217ENST00000496298 BRCC3P46736 316 aa21.16■□□□□ 0.98
USP40-217ENST00000496298 LIG4P49917 911 aa21.16■□□□□ 0.98
USP40-217ENST00000496298 ZBTB6Q15916 424 aa21.16■□□□□ 0.98
USP40-217ENST00000496298 RRAGBQ5VZM2 374 aa21.16■□□□□ 0.98
USP40-217ENST00000496298 ANKS3Q6ZW76 656 aa21.16■□□□□ 0.98
USP40-217ENST00000496298 MAP4K3Q8IVH8 894 aa21.16■□□□□ 0.98
USP40-217ENST00000496298 KRI1Q8N9T8 703 aaKnown RBP21.16■□□□□ 0.98
USP40-217ENST00000496298 BICD1Q96G01 975 aa21.16■□□□□ 0.98
USP40-217ENST00000496298 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.16■□□□□ 0.98
USP40-217ENST00000496298 CLUHO75153 1309 aa21.15■□□□□ 0.98
USP40-217ENST00000496298 HNRNPDLO14979 420 aaKnown RBP21.15■□□□□ 0.98
USP40-217ENST00000496298 OGTO15294 1046 aa21.15■□□□□ 0.98
USP40-217ENST00000496298 N4BP1O75113 896 aaKnown RBP21.15■□□□□ 0.98
USP40-217ENST00000496298 HNRNPA1P09651 372 aaKnown RBP eCLIP21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms