RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 KIAA1024Q9UPX6 916 aa13.91□□□□□ -0.18
SKA1-205ENST00000494518 CDY1Q9Y6F8 540 aa13.91□□□□□ -0.18
SKA1-205ENST00000494518 F5P12259 2224 aa13.9□□□□□ -0.18
SKA1-205ENST00000494518 CCDC169A6NNP5 214 aa13.9□□□□□ -0.18
SKA1-205ENST00000494518 PP2D1A8MPX8 630 aa13.9□□□□□ -0.18
SKA1-205ENST00000494518 C1RP00736 705 aa13.9□□□□□ -0.18
SKA1-205ENST00000494518 HNRNPA1P09651 372 aaKnown RBP eCLIP13.9□□□□□ -0.18
SKA1-205ENST00000494518 HARSP12081 509 aaKnown RBP13.9□□□□□ -0.18
SKA1-205ENST00000494518 PEX3P56589 373 aa13.9□□□□□ -0.18
SKA1-205ENST00000494518 SOX4Q06945 474 aaPredicted RBP13.9□□□□□ -0.18
SKA1-205ENST00000494518 ELAVL2Q12926 359 aaKnown RBP13.9□□□□□ -0.18
SKA1-205ENST00000494518 SNW1Q13573 536 aaKnown RBP13.9□□□□□ -0.18
SKA1-205ENST00000494518 HAUS3Q68CZ6 603 aa13.9□□□□□ -0.18
SKA1-205ENST00000494518 CD300LGQ6UXG3 332 aa13.9□□□□□ -0.18
SKA1-205ENST00000494518 SNX29Q8TEQ0 813 aa13.9□□□□□ -0.18
SKA1-205ENST00000494518 PPP1R10Q96QC0 940 aaKnown RBP13.9□□□□□ -0.18
SKA1-205ENST00000494518 FOXP1Q9H334 677 aaPredicted RBP13.9□□□□□ -0.18
SKA1-205ENST00000494518 PLSCR2Q9NRY7 297 aa13.9□□□□□ -0.18
SKA1-205ENST00000494518 PPP4R2Q9NY27 417 aa13.9□□□□□ -0.18
SKA1-205ENST00000494518 LRWD1Q9UFC0 647 aa13.9□□□□□ -0.18
SKA1-205ENST00000494518 LIMCH1Q9UPQ0 1083 aa13.9□□□□□ -0.18
SKA1-205ENST00000494518 SIT1Q9Y3P8 196 aa13.9□□□□□ -0.18
SKA1-205ENST00000494518 CACNA1AO00555 2505 aa13.9□□□□□ -0.18
SKA1-205ENST00000494518 DNAH14Q0VDD8 3507 aa13.89□□□□□ -0.19
SKA1-205ENST00000494518 ANK1P16157 1881 aa13.89□□□□□ -0.19
SKA1-205ENST00000494518 E9PMD0 336 aa13.89□□□□□ -0.19
SKA1-205ENST00000494518 XYLBO75191 536 aa13.89□□□□□ -0.19
SKA1-205ENST00000494518 GLULP15104 373 aa13.89□□□□□ -0.19
SKA1-205ENST00000494518 FGFR3P22607 806 aa13.89□□□□□ -0.19
SKA1-205ENST00000494518 ARPP19P56211 112 aa13.89□□□□□ -0.19
SKA1-205ENST00000494518 RAB33AQ14088 237 aa13.89□□□□□ -0.19
SKA1-205ENST00000494518 ZNF568Q3ZCX4 644 aa13.89□□□□□ -0.19
SKA1-205ENST00000494518 C4orf32Q8N8J7 132 aa13.89□□□□□ -0.19
SKA1-205ENST00000494518 FAM184AQ8NB25 1140 aa13.89□□□□□ -0.19
SKA1-205ENST00000494518 FBXO18Q8NFZ0 1043 aa13.89□□□□□ -0.19
SKA1-205ENST00000494518 PJA1Q8NG27 643 aa13.89□□□□□ -0.19
SKA1-205ENST00000494518 KIFAP3Q92845 792 aa13.89□□□□□ -0.19
SKA1-205ENST00000494518 DDX27Q96GQ7 796 aaKnown RBP13.89□□□□□ -0.19
SKA1-205ENST00000494518 CDT1Q9H211 546 aa13.89□□□□□ -0.19
SKA1-205ENST00000494518 SLC2A4RGQ9NR83 387 aa13.89□□□□□ -0.19
SKA1-205ENST00000494518 DNMT3BQ9UBC3 853 aaKnown RBP13.89□□□□□ -0.19
SKA1-205ENST00000494518 MTRRQ9UBK8 725 aa13.89□□□□□ -0.19
SKA1-205ENST00000494518 SPTBN2O15020 2390 aa13.88□□□□□ -0.19
SKA1-205ENST00000494518 K7ERI5 159 aa13.88□□□□□ -0.19
SKA1-205ENST00000494518 HIP1RO75146 1068 aa13.88□□□□□ -0.19
SKA1-205ENST00000494518 CD72P21854 359 aa13.88□□□□□ -0.19
SKA1-205ENST00000494518 CDC25AP30304 524 aa13.88□□□□□ -0.19
SKA1-205ENST00000494518 NPTX2P47972 431 aa13.88□□□□□ -0.19
SKA1-205ENST00000494518 RBM25P49756 843 aaKnown RBP13.88□□□□□ -0.19
SKA1-205ENST00000494518 EFNA5P52803 228 aa13.88□□□□□ -0.19
SKA1-205ENST00000494518 ORC2Q13416 577 aaPredicted RBP13.88□□□□□ -0.19
SKA1-205ENST00000494518 ZRSR1Q15695 479 aaKnown RBP13.88□□□□□ -0.19
SKA1-205ENST00000494518 UPP1Q16831 310 aa13.88□□□□□ -0.19
SKA1-205ENST00000494518 PABPC1LQ4VXU2 614 aaKnown RBP13.88□□□□□ -0.19
SKA1-205ENST00000494518 PHLDB3Q6NSJ2 640 aa13.88□□□□□ -0.19
SKA1-205ENST00000494518 PDXDC1Q6P996 788 aa13.88□□□□□ -0.19
SKA1-205ENST00000494518 NPAS3Q8IXF0 933 aa13.88□□□□□ -0.19
SKA1-205ENST00000494518 TMEM130Q8N3G9 435 aa13.88□□□□□ -0.19
SKA1-205ENST00000494518 MCRS1Q96EZ8 462 aa13.88□□□□□ -0.19
SKA1-205ENST00000494518 RUSC1Q9BVN2 902 aa13.88□□□□□ -0.19
SKA1-205ENST00000494518 CCDC94Q9BW85 323 aaPredicted RBP13.88□□□□□ -0.19
SKA1-205ENST00000494518 TARS2Q9BW92 718 aaKnown RBP13.88□□□□□ -0.19
SKA1-205ENST00000494518 DLGAP2Q9P1A6 1054 aa13.88□□□□□ -0.19
SKA1-205ENST00000494518 NOL7Q9UMY1 257 aaKnown RBP13.88□□□□□ -0.19
SKA1-205ENST00000494518 PCDHB6Q9Y5E3 794 aa13.88□□□□□ -0.19
SKA1-205ENST00000494518 TICRRQ7Z2Z1 1910 aa13.88□□□□□ -0.19
SKA1-205ENST00000494518 SMIM28A0A1B0GU29 152 aa13.87□□□□□ -0.19
SKA1-205ENST00000494518 TMEM189-UBE2V1I3L0A0 370 aa13.87□□□□□ -0.19
SKA1-205ENST00000494518 SP9P0CG40 484 aa13.87□□□□□ -0.19
SKA1-205ENST00000494518 HOXA9P31269 272 aa13.87□□□□□ -0.19
SKA1-205ENST00000494518 TOB1P50616 345 aaPredicted RBP13.87□□□□□ -0.19
SKA1-205ENST00000494518 RAD51AP2Q09MP3 1159 aa13.87□□□□□ -0.19
SKA1-205ENST00000494518 PTGDRQ13258 359 aa13.87□□□□□ -0.19
SKA1-205ENST00000494518 UBXN2BQ14CS0 331 aa13.87□□□□□ -0.19
SKA1-205ENST00000494518 SLC5A9Q2M3M2 681 aa13.87□□□□□ -0.19
SKA1-205ENST00000494518 MTSS1LQ765P7 747 aa13.87□□□□□ -0.19
SKA1-205ENST00000494518 TAS1R3Q7RTX0 852 aa13.87□□□□□ -0.19
SKA1-205ENST00000494518 KCNK18Q7Z418 384 aa13.87□□□□□ -0.19
SKA1-205ENST00000494518 DAW1Q8N136 415 aa13.87□□□□□ -0.19
SKA1-205ENST00000494518 C18orf25Q96B23 403 aaPredicted RBP13.87□□□□□ -0.19
SKA1-205ENST00000494518 ZMAT2Q96NC0 199 aaKnown RBP13.87□□□□□ -0.19
SKA1-205ENST00000494518 ACO2Q99798 780 aaKnown RBP13.87□□□□□ -0.19
SKA1-205ENST00000494518 HINFPQ9BQA5 517 aa13.87□□□□□ -0.19
SKA1-205ENST00000494518 TNFSF13BQ9Y275 285 aa13.87□□□□□ -0.19
SKA1-205ENST00000494518 MRPS23Q9Y3D9 190 aaKnown RBP13.87□□□□□ -0.19
SKA1-205ENST00000494518 MTF2Q9Y483 593 aaPredicted RBP13.87□□□□□ -0.19
SKA1-205ENST00000494518 ZFP37Q9Y6Q3 630 aaPredicted RBP13.87□□□□□ -0.19
SKA1-205ENST00000494518 PHLPP2Q6ZVD8 1323 aa13.87□□□□□ -0.19
SKA1-205ENST00000494518 SFI1A8K8P3 1242 aa13.86□□□□□ -0.19
SKA1-205ENST00000494518 PODXLO00592 558 aa13.86□□□□□ -0.19
SKA1-205ENST00000494518 SLC16A4O15374 487 aa13.86□□□□□ -0.19
SKA1-205ENST00000494518 LMNAP02545 664 aaKnown RBP13.86□□□□□ -0.19
SKA1-205ENST00000494518 CEBPBP17676 345 aa13.86□□□□□ -0.19
SKA1-205ENST00000494518 MUTP22033 750 aa13.86□□□□□ -0.19
SKA1-205ENST00000494518 GRM5P41594 1212 aa13.86□□□□□ -0.19
SKA1-205ENST00000494518 ID4P47928 161 aa13.86□□□□□ -0.19
SKA1-205ENST00000494518 YARSP54577 528 aaKnown RBP13.86□□□□□ -0.19
SKA1-205ENST00000494518 STARD6P59095 220 aa13.86□□□□□ -0.19
SKA1-205ENST00000494518 ROR1Q01973 937 aa13.86□□□□□ -0.19
SKA1-205ENST00000494518 DMP1Q13316 513 aaPredicted RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms