RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 CACNG4Q9UBN1 327 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 TUBGCP4Q9UGJ1 667 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 ARMCX3Q9UH62 379 aaPredicted RBP17.08■□□□□ 0.32
HPS4-216ENST00000493455 CASTOR2A6NHX0 329 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 LRRIQ3A6PVS8 624 aaPredicted RBP17.07■□□□□ 0.32
HPS4-216ENST00000493455 KCNJ18B7U540 433 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 GOLGA6L19H0YKK7 550 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 PES1O00541 588 aaKnown RBP17.07■□□□□ 0.32
HPS4-216ENST00000493455 ZC3H11AO75152 810 aaKnown RBP eCLIP17.07■□□□□ 0.32
HPS4-216ENST00000493455 THP07101 528 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 MYOGP15173 224 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 CDK11BP21127 795 aaKnown RBP17.07■□□□□ 0.32
HPS4-216ENST00000493455 BMP8BP34820 402 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 BFSP1Q12934 665 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 GRIK3Q13003 919 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 KCNJ12Q14500 433 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 PSMD6Q15008 389 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 SURF1Q15526 300 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 CD302Q8IX05 232 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 EFCAB13Q8IY85 973 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 CRIPAKQ8N1N5 446 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 LRRC43Q8N309 656 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 CGRRF1Q99675 332 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 MKNK1Q9BUB5 465 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 MRPL9Q9BYD2 267 aaKnown RBP17.07■□□□□ 0.32
HPS4-216ENST00000493455 ASB7Q9H672 318 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 PLEKHA5Q9HAU0 1116 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 NLRC5Q86WI3 1866 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 COL4A6Q14031 1691 aa17.07■□□□□ 0.32
HPS4-216ENST00000493455 PTPRJQ12913 1337 aa17.06■□□□□ 0.32
HPS4-216ENST00000493455 LCHNA4D1U4 455 aa17.06■□□□□ 0.32
HPS4-216ENST00000493455 GNA14O95837 355 aa17.06■□□□□ 0.32
HPS4-216ENST00000493455 TNNC2P02585 160 aa17.06■□□□□ 0.32
HPS4-216ENST00000493455 TPM4P67936 248 aa17.06■□□□□ 0.32
HPS4-216ENST00000493455 NCAPHQ15003 741 aa17.06■□□□□ 0.32
HPS4-216ENST00000493455 IQCB1Q15051 598 aa17.06■□□□□ 0.32
HPS4-216ENST00000493455 FOXR2Q6PJQ5 311 aa17.06■□□□□ 0.32
HPS4-216ENST00000493455 ALKAL1Q6UXT8 129 aa17.06■□□□□ 0.32
HPS4-216ENST00000493455 FRMD5Q7Z6J6 570 aa17.06■□□□□ 0.32
HPS4-216ENST00000493455 USP37Q86T82 979 aa17.06■□□□□ 0.32
HPS4-216ENST00000493455 ZNF280BQ86YH2 543 aa17.06■□□□□ 0.32
HPS4-216ENST00000493455 GSTCDQ8NEC7 633 aa17.06■□□□□ 0.32
HPS4-216ENST00000493455 ANKRD36BP1Q96IX9 119 aa17.06■□□□□ 0.32
HPS4-216ENST00000493455 RAD9AQ99638 391 aa17.06■□□□□ 0.32
HPS4-216ENST00000493455 MTMR12Q9C0I1 747 aa17.06■□□□□ 0.32
HPS4-216ENST00000493455 METTL14Q9HCE5 456 aaKnown RBP17.06■□□□□ 0.32
HPS4-216ENST00000493455 INSL6Q9Y581 213 aa17.06■□□□□ 0.32
HPS4-216ENST00000493455 IKBKBO14920 756 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 MAPK13O15264 365 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 XPOTO43592 962 aaKnown RBP17.05■□□□□ 0.32
HPS4-216ENST00000493455 DDHD2O94830 711 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 CAVIN2O95810 425 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 KRT19P08727 400 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 PRKCSHP14314 528 aaPredicted RBP17.05■□□□□ 0.32
HPS4-216ENST00000493455 PBX2P40425 430 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 PBX3P40426 434 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 GCLMP48507 274 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 SOX4Q06945 474 aaPredicted RBP17.05■□□□□ 0.32
HPS4-216ENST00000493455 BIRC3Q13489 604 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 IRF2BP1Q8IU81 584 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 WDR49Q8IV35 697 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 CMTR2Q8IYT2 770 aaKnown RBP17.05■□□□□ 0.32
HPS4-216ENST00000493455 FIBCD1Q8N539 461 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 BEST2Q8NFU1 509 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 OR5B17Q8NGF7 314 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 PARD3BQ8TEW8 1205 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 CACTINQ8WUQ7 758 aaKnown RBP17.05■□□□□ 0.32
HPS4-216ENST00000493455 TMEM174Q8WUU8 243 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 ZNF689Q96CS4 500 aaPredicted RBP17.05■□□□□ 0.32
HPS4-216ENST00000493455 PPP1R10Q96QC0 940 aaKnown RBP17.05■□□□□ 0.32
HPS4-216ENST00000493455 TAB2Q9NYJ8 693 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 KANSL3Q9P2N6 904 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 DNAJB4Q9UDY4 337 aa17.05■□□□□ 0.32
HPS4-216ENST00000493455 UBQLN1Q9UMX0 589 aaKnown RBP17.05■□□□□ 0.32
HPS4-216ENST00000493455 COLQQ9Y215 455 aaPredicted RBP17.05■□□□□ 0.32
HPS4-216ENST00000493455 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.05■□□□□ 0.32
HPS4-216ENST00000493455 MRPL42Q9Y6G3 142 aaKnown RBP17.05■□□□□ 0.32
HPS4-216ENST00000493455 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.04■□□□□ 0.32
HPS4-216ENST00000493455 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.04■□□□□ 0.32
HPS4-216ENST00000493455 B4GALT3O60512 393 aa17.04■□□□□ 0.32
HPS4-216ENST00000493455 PHACTR2O75167 634 aa17.04■□□□□ 0.32
HPS4-216ENST00000493455 KCNE1P15382 129 aa17.04■□□□□ 0.32
HPS4-216ENST00000493455 OR1G1P47890 313 aa17.04■□□□□ 0.32
HPS4-216ENST00000493455 HTRA4P83105 476 aaPredicted RBP17.04■□□□□ 0.32
HPS4-216ENST00000493455 XKR4Q5GH76 650 aa17.04■□□□□ 0.32
HPS4-216ENST00000493455 ANKRD20A12PQ8NF67 263 aa17.04■□□□□ 0.32
HPS4-216ENST00000493455 TMC2Q8TDI7 906 aa17.04■□□□□ 0.32
HPS4-216ENST00000493455 NKX2-4Q9H2Z4 354 aa17.04■□□□□ 0.32
HPS4-216ENST00000493455 NRDE2Q9H7Z3 1164 aa17.04■□□□□ 0.32
HPS4-216ENST00000493455 RC3H2Q9HBD1 1191 aaKnown RBP17.04■□□□□ 0.32
HPS4-216ENST00000493455 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.04■□□□□ 0.32
HPS4-216ENST00000493455 SLC38A7Q9NVC3 462 aa17.04■□□□□ 0.32
HPS4-216ENST00000493455 INTS13Q9NVM9 706 aa17.04■□□□□ 0.32
HPS4-216ENST00000493455 DPP3Q9NY33 737 aa17.04■□□□□ 0.32
HPS4-216ENST00000493455 MTUS1Q9ULD2 1270 aa17.04■□□□□ 0.32
HPS4-216ENST00000493455 PRG3Q9Y2Y8 225 aaPredicted RBP17.04■□□□□ 0.32
HPS4-216ENST00000493455 R3HCC1Q9Y3T6 440 aaKnown RBP17.04■□□□□ 0.32
HPS4-216ENST00000493455 NT5C1B-RDH14C9J2C7 533 aa17.03■□□□□ 0.32
HPS4-216ENST00000493455 ITGB3P05106 788 aa17.03■□□□□ 0.32
HPS4-216ENST00000493455 CA3P07451 260 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms