RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 OR10H5Q8NGA6 315 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 OR52N2Q8NGI0 321 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 CCHCR1Q8TD31 782 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 STON2Q8WXE9 905 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 HAS1Q92839 578 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 HDAC10Q969S8 669 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 FAXDC2Q96IV6 333 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 NDC1Q9BTX1 674 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 NRDE2Q9H7Z3 1164 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 TRPM5Q9NZQ8 1165 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 TRPS1Q9UHF7 1281 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 AJAP1Q9UKB5 411 aaPredicted RBP2.86□□□□□ -1.95
HMGB1-208ENST00000490788 NOP58Q9Y2X3 529 aaKnown RBP2.86□□□□□ -1.95
HMGB1-208ENST00000490788 SPEF1Q9Y4P9 236 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 ARAP3Q8WWN8 1544 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 AKNAQ7Z591 1439 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 CDK12Q9NYV4 1490 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-208ENST00000490788 WDR7Q9Y4E6 1490 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 RNASET2O00584 256 aaKnown RBP2.85□□□□□ -1.95
HMGB1-208ENST00000490788 CYR61O00622 381 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 PJA2O43164 708 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 NDUFS2O75306 463 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 GPR32O75388 356 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 POMCP01189 267 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 ALAS1P13196 640 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 LAG3P18627 525 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 APOBEC3AP31941 199 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-208ENST00000490788 SREBF1P36956 1147 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 HMGA2P52926 109 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 IGBP1P78318 339 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 KIF23Q02241 960 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-208ENST00000490788 NHLH2Q02577 135 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 TOB2Q14106 344 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-208ENST00000490788 BMT2Q1RMZ1 405 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 UAP1L1Q3KQV9 507 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 SPDYE7PQ495Y7 208 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 TIGD2Q4W5G0 525 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 MFSD14BQ5SR56 506 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 AFMIDQ63HM1 303 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 NAIF1Q69YI7 327 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-208ENST00000490788 DRICH1Q6PGQ1 229 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-208ENST00000490788 KCNV1Q6PIU1 500 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 ZNF572Q7Z3I7 529 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-208ENST00000490788 DRC7Q8IY82 874 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 FAM177A1Q8N128 213 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-208ENST00000490788 MIER2Q8N344 545 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 DDX55Q8NHQ9 600 aaKnown RBP eCLIP2.85□□□□□ -1.95
HMGB1-208ENST00000490788 CACTINQ8WUQ7 758 aaKnown RBP2.85□□□□□ -1.95
HMGB1-208ENST00000490788 NRG4Q8WWG1 115 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 NEU4Q8WWR8 484 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-208ENST00000490788 CLIP3Q96DZ5 547 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 CEP95Q96GE4 821 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 FUBP3Q96I24 572 aaKnown RBP eCLIP2.85□□□□□ -1.95
HMGB1-208ENST00000490788 MRI1Q9BV20 369 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 LSM14BQ9BX40 385 aaKnown RBP2.85□□□□□ -1.95
HMGB1-208ENST00000490788 BRINP2Q9C0B6 783 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 CCDC8Q9H0W5 538 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-208ENST00000490788 KCNH6Q9H252 994 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 LDAHQ9H6V9 325 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 SLC2A4RGQ9NR83 387 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 ZNF277Q9NRM2 450 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-208ENST00000490788 TDP1Q9NUW8 608 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 CEP72Q9P209 647 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 ATP11BQ9Y2G3 1177 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 ADAMTS12P58397 1594 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 WIZO95785 1651 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 RGS12O14924 1447 aa2.85□□□□□ -1.95
HMGB1-208ENST00000490788 SHANK2Q9UPX8 1470 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 GAGE12BA1L429 117 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 GAGE12HA6NDE8 117 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 CXorf49A8MYA2 514 aaPredicted RBP2.84□□□□□ -1.95
HMGB1-208ENST00000490788 PLSCR1O15162 318 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 DTNBO60941 627 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 ABHD16AO95870 558 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 CT47B1P0C2W7 299 aaPredicted RBP2.84□□□□□ -1.95
HMGB1-208ENST00000490788 DDCP20711 480 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 RNASE9P60153 205 aaKnown RBP2.84□□□□□ -1.95
HMGB1-208ENST00000490788 FHL2Q14192 279 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 PTPAQ15257 358 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 LY6G5CQ5SRR4 150 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 ANKS6Q68DC2 871 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 ZNF529Q6P280 563 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 FOXR2Q6PJQ5 311 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 GADL1Q6ZQY3 521 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 Q6ZVL8 140 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 HTR3DQ70Z44 454 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 MED25Q71SY5 747 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 GDF7Q7Z4P5 450 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 ZBTB46Q86UZ6 589 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 PLXDC1Q8IUK5 500 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 ZFPM1Q8IX07 1006 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 LILRA3Q8N6C8 439 aaPredicted RBP2.84□□□□□ -1.95
HMGB1-208ENST00000490788 PROKR1Q8TCW9 393 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 CASKIN2Q8WXE0 1202 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 JADE3Q92613 823 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 DPF2Q92785 391 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 SLC46A2Q9BY10 475 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 CPEB1Q9BZB8 566 aaKnown RBP2.84□□□□□ -1.95
HMGB1-208ENST00000490788 TRIM8Q9BZR9 551 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 MMRN2Q9H8L6 949 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms