RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 S1PR5Q9H228 398 aa18.59■□□□□ 0.57
VIM-205ENST00000485947 PDZD7Q9H5P4 517 aa18.59■□□□□ 0.57
VIM-205ENST00000485947 CD320Q9NPF0 282 aa18.59■□□□□ 0.57
VIM-205ENST00000485947 ARHGAP28Q9P2N2 729 aa18.59■□□□□ 0.57
VIM-205ENST00000485947 SEL1LQ9UBV2 794 aa18.59■□□□□ 0.57
VIM-205ENST00000485947 HES2Q9Y543 173 aa18.59■□□□□ 0.57
VIM-205ENST00000485947 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.58■□□□□ 0.56
VIM-205ENST00000485947 H0YCG3 227 aa18.58■□□□□ 0.56
VIM-205ENST00000485947 EFEMP2O95967 443 aa18.58■□□□□ 0.56
VIM-205ENST00000485947 ERCC5P28715 1186 aaPredicted RBP18.58■□□□□ 0.56
VIM-205ENST00000485947 NPTX2P47972 431 aa18.58■□□□□ 0.56
VIM-205ENST00000485947 MRE11P49959 708 aa18.58■□□□□ 0.56
VIM-205ENST00000485947 SCNN1GP51170 649 aa18.58■□□□□ 0.56
VIM-205ENST00000485947 SMTNP53814 917 aa18.58■□□□□ 0.56
VIM-205ENST00000485947 CLUL1Q15846 466 aa18.58■□□□□ 0.56
VIM-205ENST00000485947 UVSSAQ2YD98 709 aa18.58■□□□□ 0.56
VIM-205ENST00000485947 RNF168Q8IYW5 571 aaPredicted RBP18.58■□□□□ 0.56
VIM-205ENST00000485947 ZFP42Q96MM3 310 aa18.58■□□□□ 0.56
VIM-205ENST00000485947 NECTIN4Q96NY8 510 aa18.58■□□□□ 0.56
VIM-205ENST00000485947 PHF7Q9BWX1 381 aaPredicted RBP18.58■□□□□ 0.56
VIM-205ENST00000485947 CBX8Q9HC52 389 aa18.58■□□□□ 0.56
VIM-205ENST00000485947 MRPL17Q9NRX2 175 aaKnown RBP18.58■□□□□ 0.56
VIM-205ENST00000485947 PARP2Q9UGN5 583 aa18.58■□□□□ 0.56
VIM-205ENST00000485947 DPP7Q9UHL4 492 aa18.58■□□□□ 0.56
VIM-205ENST00000485947 TNFSF13BQ9Y275 285 aa18.58■□□□□ 0.56
VIM-205ENST00000485947 USP15Q9Y4E8 981 aaPredicted RBP18.58■□□□□ 0.56
VIM-205ENST00000485947 HCFC2Q9Y5Z7 792 aa18.58■□□□□ 0.56
VIM-205ENST00000485947 WDFY4Q6ZS81 3184 aa18.58■□□□□ 0.56
VIM-205ENST00000485947 NPHP3-ACAD11A0A0J9YXS1 232 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 CCDC169A6NNP5 214 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 SMTNL1A8MU46 457 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 IKBKBO14920 756 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 B4GALT3O60512 393 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 LILRB3O75022 631 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 HIP1RO75146 1068 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 FAM13AO94988 1023 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 AKAP5P24588 427 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 OR1G1P47890 313 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 ZNF131P52739 623 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 CBX2Q14781 532 aaPredicted RBP18.57■□□□□ 0.56
VIM-205ENST00000485947 IQCB1Q15051 598 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 PTPN14Q15678 1187 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 HERC4Q5GLZ8 1057 aaPredicted RBP18.57■□□□□ 0.56
VIM-205ENST00000485947 FAM26FQ5R3K3 315 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 L1TD1Q5T7N2 865 aaKnown RBP18.57■□□□□ 0.56
VIM-205ENST00000485947 ATF7IP2Q5U623 682 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 CES5AQ6NT32 575 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 SYCE2Q6PIF2 218 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 ELMSAN1Q6PJG2 1045 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 DAW1Q8N136 415 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 BCL7CQ8WUZ0 217 aaPredicted RBP18.57■□□□□ 0.56
VIM-205ENST00000485947 HERC2P3Q9BVR0 1158 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 APOL6Q9BWW8 343 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 GRPEL1Q9HAV7 217 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 PARVGQ9HBI0 331 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 KMT5AQ9NQR1 393 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 OLFML3Q9NRN5 406 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 MIOSQ9NXC5 875 aa18.57■□□□□ 0.56
VIM-205ENST00000485947 KIF20AO95235 890 aa18.56■□□□□ 0.56
VIM-205ENST00000485947 URODP06132 367 aa18.56■□□□□ 0.56
VIM-205ENST00000485947 THP07101 528 aa18.56■□□□□ 0.56
VIM-205ENST00000485947 PLS3P13797 630 aa18.56■□□□□ 0.56
VIM-205ENST00000485947 ABCD1P33897 745 aa18.56■□□□□ 0.56
VIM-205ENST00000485947 PEX3P56589 373 aa18.56■□□□□ 0.56
VIM-205ENST00000485947 CREMQ03060 361 aa18.56■□□□□ 0.56
VIM-205ENST00000485947 TUSC3Q13454 348 aa18.56■□□□□ 0.56
VIM-205ENST00000485947 ADSSL1Q8N142 457 aa18.56■□□□□ 0.56
VIM-205ENST00000485947 VN1R3Q9BXE9 311 aa18.56■□□□□ 0.56
VIM-205ENST00000485947 MRPL4Q9BYD3 311 aaKnown RBP18.56■□□□□ 0.56
VIM-205ENST00000485947 ADAM7Q9H2U9 754 aa18.56■□□□□ 0.56
VIM-205ENST00000485947 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.56■□□□□ 0.56
VIM-205ENST00000485947 MARCH5Q9NX47 278 aa18.56■□□□□ 0.56
VIM-205ENST00000485947 LARSQ9P2J5 1176 aaKnown RBP18.56■□□□□ 0.56
VIM-205ENST00000485947 GDAQ9Y2T3 454 aa18.56■□□□□ 0.56
VIM-205ENST00000485947 BECN2A8MW95 431 aa18.55■□□□□ 0.56
VIM-205ENST00000485947 LOC730098B7Z3J9 87 aa18.55■□□□□ 0.56
VIM-205ENST00000485947 PPP1R3GB7ZBB8 358 aa18.55■□□□□ 0.56
VIM-205ENST00000485947 PSMA7O14818 248 aa18.55■□□□□ 0.56
VIM-205ENST00000485947 DCXO43602 365 aa18.55■□□□□ 0.56
VIM-205ENST00000485947 CA8P35219 290 aa18.55■□□□□ 0.56
VIM-205ENST00000485947 CACNB1Q02641 598 aaPredicted RBP18.55■□□□□ 0.56
VIM-205ENST00000485947 RAD51AP2Q09MP3 1159 aa18.55■□□□□ 0.56
VIM-205ENST00000485947 STK4Q13043 487 aa18.55■□□□□ 0.56
VIM-205ENST00000485947 MAPK7Q13164 816 aa18.55■□□□□ 0.56
VIM-205ENST00000485947 CDR2LQ86X02 465 aaPredicted RBP18.55■□□□□ 0.56
VIM-205ENST00000485947 GUF1Q8N442 669 aaKnown RBP18.55■□□□□ 0.56
VIM-205ENST00000485947 KIAA0895Q8NCT3 520 aa18.55■□□□□ 0.56
VIM-205ENST00000485947 RNF214Q8ND24 703 aa18.55■□□□□ 0.56
VIM-205ENST00000485947 SLC22A17Q8WUG5 538 aa18.55■□□□□ 0.56
VIM-205ENST00000485947 TOPORSQ9NS56 1045 aaPredicted RBP18.55■□□□□ 0.56
VIM-205ENST00000485947 CHST7Q9NS84 486 aa18.55■□□□□ 0.56
VIM-205ENST00000485947 TTLL13PA6NNM8 815 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 GOLGA6L19H0YKK7 550 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 RECQL4O94761 1208 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 MAPTP10636 758 aaKnown RBP18.54■□□□□ 0.56
VIM-205ENST00000485947 CD44P16070 742 aaKnown RBP18.54■□□□□ 0.56
VIM-205ENST00000485947 PRCPP42785 496 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 MTHFRP42898 656 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 GLUD2P49448 558 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 TPM4P67936 248 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms