RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 NMT1P30419 496 aaKnown RBP8.76□□□□□ -1.01
USP40-216ENST00000485943 HOXA11P31270 313 aaPredicted RBP8.76□□□□□ -1.01
USP40-216ENST00000485943 NCKAP1LP55160 1127 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 COPS2P61201 443 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 ELAVL2Q12926 359 aaKnown RBP8.76□□□□□ -1.01
USP40-216ENST00000485943 COASYQ13057 564 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 STIM1Q13586 685 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 SMC1AQ14683 1233 aaKnown RBP8.76□□□□□ -1.01
USP40-216ENST00000485943 PTPRNQ16849 979 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 CLLU1OSQ5K130 101 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 FAM26FQ5R3K3 315 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 CEP57Q86XR8 500 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 TMEM161BQ8NDZ6 487 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 CLP1Q92989 425 aaKnown RBP8.76□□□□□ -1.01
USP40-216ENST00000485943 VWCEQ96DN2 955 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 ACO2Q99798 780 aaKnown RBP8.76□□□□□ -1.01
USP40-216ENST00000485943 TCF25Q9BQ70 676 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 TMEM175Q9BSA9 504 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 BLZF1Q9H2G9 400 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 NGRNQ9NPE2 291 aaKnown RBP8.76□□□□□ -1.01
USP40-216ENST00000485943 MRPL17Q9NRX2 175 aaKnown RBP8.76□□□□□ -1.01
USP40-216ENST00000485943 RMND1Q9NWS8 449 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 CLDND1Q9NY35 253 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 SERTAD1Q9UHV2 236 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 A0A1W2PQ27 194 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 A0A1W2PQ64 194 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 A0A1W2PQD8 194 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 ARHGEF37A1IGU5 675 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 CASTOR2A6NHX0 329 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 C2CD2LO14523 706 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 OGTO15294 1046 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 DXOO77932 396 aaKnown RBP8.75□□□□□ -1.01
USP40-216ENST00000485943 CLTAP09496 248 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 PBX3P40426 434 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 GRM5P41594 1212 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 MAPK7Q13164 816 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 TUSC3Q13454 348 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 ARSHQ5FYA8 562 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 GLRA4Q5JXX5 417 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 AGMOQ6ZNB7 445 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 UNC13DQ70J99 1090 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 MRPL10Q7Z7H8 261 aaKnown RBP8.75□□□□□ -1.01
USP40-216ENST00000485943 USP37Q86T82 979 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 RBM23Q86U06 439 aaKnown RBP8.75□□□□□ -1.01
USP40-216ENST00000485943 CD302Q8IX05 232 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 VPS52Q8N1B4 723 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 BEST2Q8NFU1 509 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 CACTINQ8WUQ7 758 aaKnown RBP8.75□□□□□ -1.01
USP40-216ENST00000485943 ZFP42Q96MM3 310 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 UROC1Q96N76 676 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 FNBP1Q96RU3 617 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 NTPCRQ9BSD7 190 aaKnown RBP8.75□□□□□ -1.01
USP40-216ENST00000485943 TRIM9Q9C026 710 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 CCDC113Q9H0I3 377 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 CDT1Q9H211 546 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 ALG2Q9H553 416 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 NRDE2Q9H7Z3 1164 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 MAP10Q9P2G4 905 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 DPP7Q9UHL4 492 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 AGO2Q9UKV8 859 aaKnown RBP8.75□□□□□ -1.01
USP40-216ENST00000485943 COG5Q9UP83 839 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 PLAGL2Q9UPG8 496 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 USP20Q9Y2K6 914 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 MTCH2Q9Y6C9 303 aa8.75□□□□□ -1.01
USP40-216ENST00000485943 SF3B1O75533 1304 aaKnown RBP eCLIP8.75□□□□□ -1.01
USP40-216ENST00000485943 COL4A4P53420 1690 aaPredicted RBP8.75□□□□□ -1.01
USP40-216ENST00000485943 PVALEFA0A1B0GWK0 134 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 C5orf67F2Z3F1 127 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 KIAA0391O15091 583 aaKnown RBP8.74□□□□□ -1.01
USP40-216ENST00000485943 GRM6O15303 877 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 CALUO43852 315 aaPredicted RBP8.74□□□□□ -1.01
USP40-216ENST00000485943 B3GAT3O94766 335 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 PRPF6O94906 941 aaKnown RBP8.74□□□□□ -1.01
USP40-216ENST00000485943 ZNF202O95125 648 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 CXCL14O95715 111 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 ITGB1P05556 798 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 TMEM191BP0C7N4 346 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 KLRC2P26717 231 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 MCM4P33991 863 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 MMP16P51512 607 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 NDUFA8P51970 172 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 ZNF131P52739 623 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 CREMQ03060 361 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 PSMD2Q13200 908 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 ZC2HC1CQ53FD0 456 aaPredicted RBP8.74□□□□□ -1.01
USP40-216ENST00000485943 UBXN11Q5T124 520 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 NT5DC1Q5TFE4 455 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 EEF1DP3Q658K8 133 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 PDXDC1Q6P996 788 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 ZNF720Q7Z2F6 126 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 ZNF598Q86UK7 904 aaKnown RBP8.74□□□□□ -1.01
USP40-216ENST00000485943 PPFIBP1Q86W92 1011 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 MAP4K3Q8IVH8 894 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 NELFCDQ8IXH7 590 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 DAW1Q8N136 415 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 SMG8Q8ND04 991 aaKnown RBP8.74□□□□□ -1.01
USP40-216ENST00000485943 GOLGA5Q8TBA6 731 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 HASPINQ8TF76 798 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 SMARCE1Q969G3 411 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 IPO9Q96P70 1041 aaKnown RBP8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms