RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 PPM1LQ5SGD2 360 aa23.63■■□□□ 1.37
USP40-215ENST00000484528 HYIQ5T013 277 aa23.63■■□□□ 1.37
USP40-215ENST00000484528 ASTLQ6HA08 431 aaPredicted RBP23.63■■□□□ 1.37
USP40-215ENST00000484528 DCLRE1AQ6PJP8 1040 aa23.63■■□□□ 1.37
USP40-215ENST00000484528 MPZL3Q6UWV2 235 aa23.63■■□□□ 1.37
USP40-215ENST00000484528 GRASPQ7Z6J2 395 aaPredicted RBP23.63■■□□□ 1.37
USP40-215ENST00000484528 ANKFY1Q9P2R3 1169 aa23.63■■□□□ 1.37
USP40-215ENST00000484528 EPS15L1Q9UBC2 864 aa23.63■■□□□ 1.37
USP40-215ENST00000484528 RBM19Q9Y4C8 960 aaKnown RBP23.63■■□□□ 1.37
USP40-215ENST00000484528 ABLIM1O14639 778 aa23.62■■□□□ 1.37
USP40-215ENST00000484528 CCL16O15467 120 aa23.62■■□□□ 1.37
USP40-215ENST00000484528 CFHP08603 1231 aa23.62■■□□□ 1.37
USP40-215ENST00000484528 MCF2P10911 925 aa23.62■■□□□ 1.37
USP40-215ENST00000484528 SEZ6Q53EL9 994 aa23.62■■□□□ 1.37
USP40-215ENST00000484528 CWF19L1Q69YN2 538 aaKnown RBP23.62■■□□□ 1.37
USP40-215ENST00000484528 PDXDC1Q6P996 788 aa23.62■■□□□ 1.37
USP40-215ENST00000484528 RSPO2Q6UXX9 243 aaPredicted RBP23.62■■□□□ 1.37
USP40-215ENST00000484528 SIX5Q8N196 739 aa23.62■■□□□ 1.37
USP40-215ENST00000484528 SYT2Q8N9I0 419 aaPredicted RBP23.62■■□□□ 1.37
USP40-215ENST00000484528 SLC7A14Q8TBB6 771 aa23.62■■□□□ 1.37
USP40-215ENST00000484528 ATOH1Q92858 354 aaPredicted RBP23.62■■□□□ 1.37
USP40-215ENST00000484528 DDX27Q96GQ7 796 aaKnown RBP23.62■■□□□ 1.37
USP40-215ENST00000484528 SNX27Q96L92 541 aa23.62■■□□□ 1.37
USP40-215ENST00000484528 UROC1Q96N76 676 aa23.62■■□□□ 1.37
USP40-215ENST00000484528 ZMAT2Q96NC0 199 aaKnown RBP23.62■■□□□ 1.37
USP40-215ENST00000484528 C17orf75Q9HAS0 396 aa23.62■■□□□ 1.37
USP40-215ENST00000484528 POLIQ9UNA4 740 aa23.62■■□□□ 1.37
USP40-215ENST00000484528 CDY1Q9Y6F8 540 aa23.62■■□□□ 1.37
USP40-215ENST00000484528 NOTCH4Q99466 2003 aa23.62■■□□□ 1.37
USP40-215ENST00000484528 GALR2O43603 387 aaPredicted RBP23.61■■□□□ 1.37
USP40-215ENST00000484528 PLA2G4BP0C869 781 aa23.61■■□□□ 1.37
USP40-215ENST00000484528 PLS3P13797 630 aa23.61■■□□□ 1.37
USP40-215ENST00000484528 PROZP22891 400 aa23.61■■□□□ 1.37
USP40-215ENST00000484528 SLC12A3P55017 1021 aa23.61■■□□□ 1.37
USP40-215ENST00000484528 STRN3Q13033 797 aa23.61■■□□□ 1.37
USP40-215ENST00000484528 TMEM119Q4V9L6 283 aa23.61■■□□□ 1.37
USP40-215ENST00000484528 ACAP3Q96P50 834 aa23.61■■□□□ 1.37
USP40-215ENST00000484528 TIPINQ9BVW5 301 aa23.61■■□□□ 1.37
USP40-215ENST00000484528 MTRRQ9UBK8 725 aa23.61■■□□□ 1.37
USP40-215ENST00000484528 PODXLO00592 558 aa23.6■■□□□ 1.37
USP40-215ENST00000484528 MEFVO15553 781 aaPredicted RBP23.6■■□□□ 1.37
USP40-215ENST00000484528 LAMP2P13473 410 aa23.6■■□□□ 1.37
USP40-215ENST00000484528 FSHRP23945 695 aa23.6■■□□□ 1.37
USP40-215ENST00000484528 XKR4Q5GH76 650 aa23.6■■□□□ 1.37
USP40-215ENST00000484528 AXDND1Q5T1B0 1012 aaPredicted RBP23.6■■□□□ 1.37
USP40-215ENST00000484528 LARP1BQ659C4 914 aaKnown RBP23.6■■□□□ 1.37
USP40-215ENST00000484528 ALKAL1Q6UXT8 129 aa23.6■■□□□ 1.37
USP40-215ENST00000484528 TMEM161BQ8NDZ6 487 aa23.6■■□□□ 1.37
USP40-215ENST00000484528 SPIRE2Q8WWL2 714 aa23.6■■□□□ 1.37
USP40-215ENST00000484528 C18orf25Q96B23 403 aaPredicted RBP23.6■■□□□ 1.37
USP40-215ENST00000484528 HNRNPA1P09651 372 aaKnown RBP eCLIP23.59■■□□□ 1.37
USP40-215ENST00000484528 MAPTP10636 758 aaKnown RBP23.59■■□□□ 1.37
USP40-215ENST00000484528 NPR3P17342 541 aa23.59■■□□□ 1.37
USP40-215ENST00000484528 RAB33AQ14088 237 aa23.59■■□□□ 1.37
USP40-215ENST00000484528 DHX8Q14562 1220 aaKnown RBP23.59■■□□□ 1.37
USP40-215ENST00000484528 NOLC1Q14978 699 aaKnown RBP eCLIP23.59■■□□□ 1.37
USP40-215ENST00000484528 ARL6IP4Q66PJ3 421 aaKnown RBP23.59■■□□□ 1.37
USP40-215ENST00000484528 SLC44A3Q8N4M1 653 aa23.59■■□□□ 1.37
USP40-215ENST00000484528 TBC1D32Q96NH3 1257 aa23.59■■□□□ 1.37
USP40-215ENST00000484528 SLC38A7Q9NVC3 462 aa23.59■■□□□ 1.37
USP40-215ENST00000484528 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP23.59■■□□□ 1.37
USP40-215ENST00000484528 TRAPPC3O43617 180 aa23.58■■□□□ 1.37
USP40-215ENST00000484528 PI15O43692 258 aa23.58■■□□□ 1.37
USP40-215ENST00000484528 MCM2P49736 904 aa23.58■■□□□ 1.37
USP40-215ENST00000484528 CLCN5P51795 746 aa23.58■■□□□ 1.37
USP40-215ENST00000484528 SMTNP53814 917 aa23.58■■□□□ 1.37
USP40-215ENST00000484528 HTR4Q13639 388 aa23.58■■□□□ 1.37
USP40-215ENST00000484528 TMEM130Q8N3G9 435 aa23.58■■□□□ 1.37
USP40-215ENST00000484528 LRRC15Q8TF66 581 aa23.58■■□□□ 1.37
USP40-215ENST00000484528 NTPCRQ9BSD7 190 aaKnown RBP23.58■■□□□ 1.37
USP40-215ENST00000484528 HCFC1R1Q9NWW0 138 aa23.58■■□□□ 1.37
USP40-215ENST00000484528 CNTN3Q9P232 1028 aa23.58■■□□□ 1.37
USP40-215ENST00000484528 DAXXQ9UER7 740 aaPredicted RBP23.58■■□□□ 1.37
USP40-215ENST00000484528 CA14Q9ULX7 337 aa23.58■■□□□ 1.37
USP40-215ENST00000484528 NUMBLQ9Y6R0 609 aa23.58■■□□□ 1.37
USP40-215ENST00000484528 TOM1L1O75674 476 aa23.57■■□□□ 1.36
USP40-215ENST00000484528 KCNE1P15382 129 aa23.57■■□□□ 1.36
USP40-215ENST00000484528 MATR3P43243 847 aaKnown RBP eCLIP23.57■■□□□ 1.36
USP40-215ENST00000484528 NUBP1P53384 320 aa23.57■■□□□ 1.36
USP40-215ENST00000484528 GRIN1Q05586 938 aa23.57■■□□□ 1.36
USP40-215ENST00000484528 ARSHQ5FYA8 562 aa23.57■■□□□ 1.36
USP40-215ENST00000484528 ANKS3Q6ZW76 656 aa23.57■■□□□ 1.36
USP40-215ENST00000484528 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.57■■□□□ 1.36
USP40-215ENST00000484528 KRBA1A5PL33 1030 aa23.56■■□□□ 1.36
USP40-215ENST00000484528 XYLBO75191 536 aa23.56■■□□□ 1.36
USP40-215ENST00000484528 AOC1P19801 751 aa23.56■■□□□ 1.36
USP40-215ENST00000484528 HOXA9P31269 272 aa23.56■■□□□ 1.36
USP40-215ENST00000484528 SLC10A6Q3KNW5 377 aa23.56■■□□□ 1.36
USP40-215ENST00000484528 VARS2Q5ST30 1063 aaKnown RBP23.56■■□□□ 1.36
USP40-215ENST00000484528 GPBP1Q86WP2 473 aa23.56■■□□□ 1.36
USP40-215ENST00000484528 ITFG1Q8TB96 612 aa23.56■■□□□ 1.36
USP40-215ENST00000484528 GPR152Q8TDT2 470 aa23.56■■□□□ 1.36
USP40-215ENST00000484528 BICD1Q96G01 975 aa23.56■■□□□ 1.36
USP40-215ENST00000484528 REEP2Q9BRK0 252 aa23.56■■□□□ 1.36
USP40-215ENST00000484528 HAPLN2Q9GZV7 340 aa23.56■■□□□ 1.36
USP40-215ENST00000484528 KCND2Q9NZV8 630 aa23.56■■□□□ 1.36
USP40-215ENST00000484528 TUBGCP4Q9UGJ1 667 aa23.56■■□□□ 1.36
USP40-215ENST00000484528 NUB1Q9Y5A7 615 aa23.56■■□□□ 1.36
USP40-215ENST00000484528 BACE2Q9Y5Z0 518 aa23.56■■□□□ 1.36
USP40-215ENST00000484528 RIF1Q5UIP0 2472 aaKnown RBP23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms