RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 TM6SF1Q9BZW5 370 aa13.91□□□□□ -0.18
SKA3-206ENST00000475251 FZD8Q9H461 694 aa13.91□□□□□ -0.18
SKA3-206ENST00000475251 TTC12Q9H892 705 aaPredicted RBP13.91□□□□□ -0.18
SKA3-206ENST00000475251 AVENQ9NQS1 362 aaPredicted RBP13.91□□□□□ -0.18
SKA3-206ENST00000475251 SNTG2Q9NY99 539 aa13.91□□□□□ -0.18
SKA3-206ENST00000475251 CACNG4Q9UBN1 327 aa13.91□□□□□ -0.18
SKA3-206ENST00000475251 BACE2Q9Y5Z0 518 aa13.91□□□□□ -0.18
SKA3-206ENST00000475251 WDR87Q6ZQQ6 2873 aa13.91□□□□□ -0.18
SKA3-206ENST00000475251 PTGESO14684 152 aa13.9□□□□□ -0.18
SKA3-206ENST00000475251 USO1O60763 962 aaKnown RBP13.9□□□□□ -0.18
SKA3-206ENST00000475251 LRG1P02750 347 aa13.9□□□□□ -0.18
SKA3-206ENST00000475251 RHOP08100 348 aa13.9□□□□□ -0.18
SKA3-206ENST00000475251 FGFR3P22607 806 aa13.9□□□□□ -0.18
SKA3-206ENST00000475251 ELF1P32519 619 aa13.9□□□□□ -0.18
SKA3-206ENST00000475251 KRT2P35908 639 aa13.9□□□□□ -0.18
SKA3-206ENST00000475251 DCAF4L1Q3SXM0 396 aa13.9□□□□□ -0.18
SKA3-206ENST00000475251 SKAP1Q86WV1 359 aa13.9□□□□□ -0.18
SKA3-206ENST00000475251 ING5Q8WYH8 240 aa13.9□□□□□ -0.18
SKA3-206ENST00000475251 PDZD7Q9H5P4 517 aa13.9□□□□□ -0.18
SKA3-206ENST00000475251 HCFC1R1Q9NWW0 138 aa13.9□□□□□ -0.18
SKA3-206ENST00000475251 CDY1Q9Y6F8 540 aa13.9□□□□□ -0.18
SKA3-206ENST00000475251 ZNF197O14709 1029 aa13.89□□□□□ -0.19
SKA3-206ENST00000475251 ADAM12O43184 909 aa13.89□□□□□ -0.19
SKA3-206ENST00000475251 B3GAT3O94766 335 aa13.89□□□□□ -0.19
SKA3-206ENST00000475251 PTPN2P17706 415 aa13.89□□□□□ -0.19
SKA3-206ENST00000475251 ATP2B1P20020 1258 aa13.89□□□□□ -0.19
SKA3-206ENST00000475251 SCRN1Q12765 414 aa13.89□□□□□ -0.19
SKA3-206ENST00000475251 PPP2R5AQ15172 486 aa13.89□□□□□ -0.19
SKA3-206ENST00000475251 MAMSTRQ6ZN01 415 aa13.89□□□□□ -0.19
SKA3-206ENST00000475251 CELF5Q8N6W0 485 aaKnown RBP13.89□□□□□ -0.19
SKA3-206ENST00000475251 OXER1Q8TDS5 423 aa13.89□□□□□ -0.19
SKA3-206ENST00000475251 PIGOQ8TEQ8 1089 aa13.89□□□□□ -0.19
SKA3-206ENST00000475251 IRF7Q92985 503 aa13.89□□□□□ -0.19
SKA3-206ENST00000475251 MCRS1Q96EZ8 462 aa13.89□□□□□ -0.19
SKA3-206ENST00000475251 BRD9Q9H8M2 597 aa13.89□□□□□ -0.19
SKA3-206ENST00000475251 HEBP1Q9NRV9 189 aa13.89□□□□□ -0.19
SKA3-206ENST00000475251 PDRG1Q9NUG6 133 aa13.89□□□□□ -0.19
SKA3-206ENST00000475251 DOCK6Q96HP0 2047 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 CEP250Q9BV73 2442 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 ACKR2O00590 384 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 NEMFO60524 1076 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 LRP3O75074 770 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 MICAL2O94851 1124 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 PRKCBP05771 671 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 TXKP42681 527 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 CCR3P51677 355 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 MTAPQ13126 283 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 NAB2Q15742 525 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 LAIR1Q6GTX8 287 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 TSSK4Q6SA08 328 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 MAEAQ7L5Y9 396 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 NOSTRINQ8IVI9 506 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 ZNF461Q8TAF7 563 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 DEPTORQ8TB45 409 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 LARP6Q9BRS8 491 aaKnown RBP13.88□□□□□ -0.19
SKA3-206ENST00000475251 TRMT61BQ9BVS5 477 aaKnown RBP13.88□□□□□ -0.19
SKA3-206ENST00000475251 CHRDQ9H2X0 955 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 ZFP14Q9HCL3 533 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 TUFT1Q9NNX1 390 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 GPRC5CQ9NQ84 441 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 COL4A3Q01955 1670 aa13.88□□□□□ -0.19
SKA3-206ENST00000475251 ARHGEF37A1IGU5 675 aa13.87□□□□□ -0.19
SKA3-206ENST00000475251 PRRG1O14668 218 aa13.87□□□□□ -0.19
SKA3-206ENST00000475251 FOXD2O60548 495 aaPredicted RBP13.87□□□□□ -0.19
SKA3-206ENST00000475251 NAMPTP43490 491 aa13.87□□□□□ -0.19
SKA3-206ENST00000475251 CLCNKBP51801 687 aa13.87□□□□□ -0.19
SKA3-206ENST00000475251 EFNA5P52803 228 aa13.87□□□□□ -0.19
SKA3-206ENST00000475251 CYP4A22Q5TCH4 519 aa13.87□□□□□ -0.19
SKA3-206ENST00000475251 SLC8B1Q6J4K2 584 aa13.87□□□□□ -0.19
SKA3-206ENST00000475251 C1orf228Q6PIY5 440 aa13.87□□□□□ -0.19
SKA3-206ENST00000475251 ELMOD1Q8N336 334 aa13.87□□□□□ -0.19
SKA3-206ENST00000475251 NETO1Q8TDF5 533 aa13.87□□□□□ -0.19
SKA3-206ENST00000475251 DDX27Q96GQ7 796 aaKnown RBP13.87□□□□□ -0.19
SKA3-206ENST00000475251 NACC1Q96RE7 527 aa13.87□□□□□ -0.19
SKA3-206ENST00000475251 TRPV5Q9NQA5 729 aa13.87□□□□□ -0.19
SKA3-206ENST00000475251 TOPORSQ9NS56 1045 aaPredicted RBP13.87□□□□□ -0.19
SKA3-206ENST00000475251 SLC38A7Q9NVC3 462 aa13.87□□□□□ -0.19
SKA3-206ENST00000475251 ORC3Q9UBD5 711 aaPredicted RBP13.87□□□□□ -0.19
SKA3-206ENST00000475251 NDRG2Q9UN36 371 aaKnown RBP13.87□□□□□ -0.19
SKA3-206ENST00000475251 GDAQ9Y2T3 454 aa13.87□□□□□ -0.19
SKA3-206ENST00000475251 VWA8A3KMH1 1905 aa13.87□□□□□ -0.19
SKA3-206ENST00000475251 ADRB1P08588 477 aa13.86□□□□□ -0.19
SKA3-206ENST00000475251 CEBPBP17676 345 aa13.86□□□□□ -0.19
SKA3-206ENST00000475251 TKTP29401 623 aaKnown RBP13.86□□□□□ -0.19
SKA3-206ENST00000475251 YARSP54577 528 aaKnown RBP13.86□□□□□ -0.19
SKA3-206ENST00000475251 ROR1Q01973 937 aa13.86□□□□□ -0.19
SKA3-206ENST00000475251 NR5A1Q13285 461 aa13.86□□□□□ -0.19
SKA3-206ENST00000475251 UPP1Q16831 310 aa13.86□□□□□ -0.19
SKA3-206ENST00000475251 SLC5A9Q2M3M2 681 aa13.86□□□□□ -0.19
SKA3-206ENST00000475251 EARS2Q5JPH6 523 aaKnown RBP13.86□□□□□ -0.19
SKA3-206ENST00000475251 TANGO2Q6ICL3 276 aa13.86□□□□□ -0.19
SKA3-206ENST00000475251 IQCEQ6IPM2 695 aa13.86□□□□□ -0.19
SKA3-206ENST00000475251 PDZD4Q76G19 769 aaPredicted RBP13.86□□□□□ -0.19
SKA3-206ENST00000475251 LEMD2Q8NC56 503 aa13.86□□□□□ -0.19
SKA3-206ENST00000475251 ERMNQ8TAM6 284 aa13.86□□□□□ -0.19
SKA3-206ENST00000475251 DEPDC1BQ8WUY9 529 aa13.86□□□□□ -0.19
SKA3-206ENST00000475251 FAM3CQ92520 227 aa13.86□□□□□ -0.19
SKA3-206ENST00000475251 MSANTD3Q96H12 275 aa13.86□□□□□ -0.19
SKA3-206ENST00000475251 IFT74Q96LB3 600 aa13.86□□□□□ -0.19
SKA3-206ENST00000475251 PPP1R10Q96QC0 940 aaKnown RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms