RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 OBP2AQ9NY56 170 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 KIAA1522Q9P206 1035 aaPredicted RBP9.02□□□□□ -0.97
USP54-211ENST00000474929 TPCN1Q9ULQ1 816 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 ARHGEF37A1IGU5 675 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 ARL5CA6NH57 179 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 B4E1Z4 1266 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 CCNE2O96020 404 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 OATP04181 439 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 ATP4AP20648 1035 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 MLH1P40692 756 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 DGKEP52429 567 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 SETQ01105 290 aaPredicted RBP9.01□□□□□ -0.97
USP54-211ENST00000474929 GFPT1Q06210 699 aaPredicted RBP9.01□□□□□ -0.97
USP54-211ENST00000474929 HSP90AA2PQ14568 343 aaPredicted RBP9.01□□□□□ -0.97
USP54-211ENST00000474929 TAF1BQ53T94 588 aaPredicted RBP9.01□□□□□ -0.97
USP54-211ENST00000474929 TXNDC11Q6PKC3 985 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 TMPRSS7Q7RTY8 843 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 GLRX5Q86SX6 157 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 PDCD7Q8N8D1 485 aaKnown RBP9.01□□□□□ -0.97
USP54-211ENST00000474929 LNX1Q8TBB1 728 aaPredicted RBP9.01□□□□□ -0.97
USP54-211ENST00000474929 CRELD1Q96HD1 420 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 B3GALT6Q96L58 329 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 DCBLD2Q96PD2 775 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 HHIPQ96QV1 700 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 GAD1Q99259 594 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 CORO1BQ9BR76 489 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 SLITRK6Q9H5Y7 841 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 PTPRQQ9UMZ3 2332 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 PCDHA6Q9UN73 950 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 GIT1Q9Y2X7 761 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 PCDHA8Q9Y5H6 950 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 PCDHA10Q9Y5I2 948 aa9.01□□□□□ -0.97
USP54-211ENST00000474929 A0A087WZ62 844 aa9□□□□□ -0.97
USP54-211ENST00000474929 ERICH2A1L162 156 aa9□□□□□ -0.97
USP54-211ENST00000474929 DPYSL4O14531 572 aa9□□□□□ -0.97
USP54-211ENST00000474929 CYTH3O43739 400 aa9□□□□□ -0.97
USP54-211ENST00000474929 FOSP01100 380 aaPredicted RBP9□□□□□ -0.97
USP54-211ENST00000474929 SYPP08247 313 aa9□□□□□ -0.97
USP54-211ENST00000474929 DRD1P21728 446 aa9□□□□□ -0.97
USP54-211ENST00000474929 SMARCA1P28370 1054 aa9□□□□□ -0.97
USP54-211ENST00000474929 AXLP30530 894 aa9□□□□□ -0.97
USP54-211ENST00000474929 IL12RB1P42701 662 aa9□□□□□ -0.97
USP54-211ENST00000474929 SOX9P48436 509 aa9□□□□□ -0.97
USP54-211ENST00000474929 SCNN1GP51170 649 aa9□□□□□ -0.97
USP54-211ENST00000474929 RIPPLY3P57055 190 aa9□□□□□ -0.97
USP54-211ENST00000474929 RHDQ02161 417 aa9□□□□□ -0.97
USP54-211ENST00000474929 CYP4F3Q08477 520 aa9□□□□□ -0.97
USP54-211ENST00000474929 NCBP1Q09161 790 aaKnown RBP9□□□□□ -0.97
USP54-211ENST00000474929 DUOXA1Q1HG43 343 aa9□□□□□ -0.97
USP54-211ENST00000474929 PEAR1Q5VY43 1037 aaPredicted RBP9□□□□□ -0.97
USP54-211ENST00000474929 TSHZ3Q63HK5 1081 aa9□□□□□ -0.97
USP54-211ENST00000474929 CEP57Q86XR8 500 aa9□□□□□ -0.97
USP54-211ENST00000474929 SIRT2Q8IXJ6 389 aa9□□□□□ -0.97
USP54-211ENST00000474929 NXPE2Q96DL1 559 aa9□□□□□ -0.97
USP54-211ENST00000474929 ZNF668Q96K58 619 aaPredicted RBP9□□□□□ -0.97
USP54-211ENST00000474929 FDXACB1Q9BRP7 624 aaPredicted RBP9□□□□□ -0.97
USP54-211ENST00000474929 GTPBP2Q9BX10 602 aaKnown RBP9□□□□□ -0.97
USP54-211ENST00000474929 ASAH2Q9NR71 780 aa9□□□□□ -0.97
USP54-211ENST00000474929 DNAAF2Q9NVR5 837 aaKnown RBP9□□□□□ -0.97
USP54-211ENST00000474929 ZSWIM5Q9P217 1185 aa9□□□□□ -0.97
USP54-211ENST00000474929 SLC6A14Q9UN76 642 aa9□□□□□ -0.97
USP54-211ENST00000474929 U3KPZ7 1027 aaPredicted RBP9□□□□□ -0.97
USP54-211ENST00000474929 DOPEY1Q5JWR5 2465 aa9□□□□□ -0.97
USP54-211ENST00000474929 THADAQ6YHU6 1953 aa9□□□□□ -0.97
USP54-211ENST00000474929 PLXNB3Q9ULL4 1909 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 BAZ2BQ9UIF8 2168 aaKnown RBP8.99□□□□□ -0.97
USP54-211ENST00000474929 WDR64B1ANS9 1081 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 DDX39AO00148 427 aaKnown RBP8.99□□□□□ -0.97
USP54-211ENST00000474929 MEIS1O00470 390 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 PRRG1O14668 218 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 DCLK1O15075 740 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 SLC28A2O43868 658 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 SMARCA5O60264 1052 aaPredicted RBP8.99□□□□□ -0.97
USP54-211ENST00000474929 CSDE1O75534 798 aaKnown RBP8.99□□□□□ -0.97
USP54-211ENST00000474929 ERLIN2O94905 339 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 CFIP05156 583 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 C6P13671 934 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 OR1D2P34982 312 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 AFF1P51825 1210 aaKnown RBP8.99□□□□□ -0.97
USP54-211ENST00000474929 FAM193AP78312 1265 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 PRKCEQ02156 737 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 BYSLQ13895 437 aaKnown RBP8.99□□□□□ -0.97
USP54-211ENST00000474929 SART3Q15020 963 aaKnown RBP8.99□□□□□ -0.97
USP54-211ENST00000474929 ITPRIPL2Q3MIP1 535 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 TMEM196Q5HYL7 178 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 WDR44Q5JSH3 913 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 FAM171A1Q5VUB5 890 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 LYSMD4Q5XG99 296 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 ANKS3Q6ZW76 656 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 SRGAP1Q7Z6B7 1085 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 NAXDQ8IW45 347 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 MINDY1Q8N5J2 469 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 TSTD1Q8NFU3 115 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 SPATA18Q8TC71 538 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 PI4K2BQ8TCG2 481 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 EVI5LQ96CN4 794 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 CNOT6LQ96LI5 555 aaKnown RBP8.99□□□□□ -0.97
USP54-211ENST00000474929 LZTS2Q9BRK4 669 aa8.99□□□□□ -0.97
USP54-211ENST00000474929 TRIM6Q9C030 488 aaPredicted RBP8.99□□□□□ -0.97
USP54-211ENST00000474929 THG1LQ9NWX6 298 aaKnown RBP8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms