RNA–Protein interactions for RNA: ENST00000474823.5

COPS6-208, Transcript of COP9 signalosome subunit 6, human

TSL 2

Gene COPS6, Length 752 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPS6-208	ENST00000474823	SPAG1	Q07617	926 aa		11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	C12orf56	Q8IXR9	622 aa		11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	TRIML1	Q8N9V2	468 aa		11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	BEST2	Q8NFU1	509 aa		11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	SPPL3	Q8TCT6	385 aa		11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	MICAL1	Q8TDZ2	1067 aa		11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	MRPL38	Q96DV4	380 aa	Known RBP	11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	ZMAT2	Q96NC0	199 aa	Known RBP	11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	TSG101	Q99816	390 aa		11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	CXCL16	Q9H2A7	254 aa		11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	KCTD10	Q9H3F6	313 aa		11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	TLR9	Q9NR96	1032 aa		11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	LMCD1	Q9NZU5	365 aa		11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	KIAA1468	Q9P260	1216 aa		11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	UBQLN1	Q9UMX0	589 aa	Known RBP	11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	LZTS1	Q9Y250	596 aa		11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	FRMD4B	Q9Y2L6	1034 aa		11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	DERA	Q9Y315	318 aa		11.43	□□□□□ -0.58
COPS6-208	ENST00000474823	KIAA1671	Q9BY89	1806 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	NR3C1	P04150	777 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	ADRB2	P07550	413 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	CYP3A5	P20815	502 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	PTMS	P20962	102 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	RPL13	P26373	211 aa	Known RBP	11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	RPL9	P32969	192 aa	Known RBP	11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	PRCP	P42785	496 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	ADGRE1	Q14246	886 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	MYBPC2	Q14324	1141 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	TMEM132D	Q14C87	1099 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	SURF1	Q15526	300 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	NAB2	Q15742	525 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	SNRNP35	Q16560	246 aa	Known RBP	11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	TIGD5	Q53EQ6	642 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	COBLL1	Q53SF7	1204 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	JADE1	Q6IE81	842 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	DCLRE1A	Q6PJP8	1040 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	CRELD2	Q6UXH1	353 aa	Predicted RBP	11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	DDX53	Q86TM3	631 aa	Known RBP	11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	NT5DC4	Q86YG4	428 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	BRSK2	Q8IWQ3	736 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	MICALL1	Q8N3F8	863 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	RDH13	Q8NBN7	331 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	ZSWIM2	Q8NEG5	633 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	GPT2	Q8TD30	523 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	CACTIN	Q8WUQ7	758 aa	Known RBP	11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	PPP2R3C	Q969Q6	453 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	GOLGA2P5	Q9HBQ8	144 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	ENTPD7	Q9NQZ7	604 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	ADAM28	Q9UKQ2	775 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	TRAF3IP3	Q9Y228	551 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	C2CD2	Q9Y426	696 aa		11.42	□□□□□ -0.58
COPS6-208	ENST00000474823	PODXL	O00592	558 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	MEFV	O15553	781 aa	Predicted RBP	11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	TRAPPC3	O43617	180 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	B3GAT3	O94766	335 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	POU3F3	P20264	500 aa	Predicted RBP	11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	NR2F2	P24468	414 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	CA8	P35219	290 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	CLCNKB	P51801	687 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	SOX4	Q06945	474 aa	Predicted RBP	11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	ELAVL2	Q12926	359 aa	Known RBP	11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	MORC3	Q14149	939 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	CEP135	Q66GS9	1140 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	PDE12	Q6L8Q7	609 aa	Known RBP	11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	TMC7	Q7Z402	723 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	TMEM173	Q86WV6	379 aa	Predicted RBP	11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	CBWD2	Q8IUF1	395 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	SLC9A9	Q8IVB4	645 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	ADSSL1	Q8N142	457 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	VPS52	Q8N1B4	723 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	RABGGTA	Q92696	567 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	C18orf25	Q96B23	403 aa	Predicted RBP	11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	DHTKD1	Q96HY7	919 aa	Predicted RBP	11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	FBXL18	Q96ME1	805 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	FNBP1	Q96RU3	617 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	TCF25	Q9BQ70	676 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	PAAF1	Q9BRP4	392 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	NGRN	Q9NPE2	291 aa	Known RBP	11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	MARCH5	Q9NX47	278 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	CACNG4	Q9UBN1	327 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	TUBGCP4	Q9UGJ1	667 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	R3HCC1	Q9Y3T6	440 aa	Known RBP	11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	NUB1	Q9Y5A7	615 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	MTCH2	Q9Y6C9	303 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	TRIP11	Q15643	1979 aa		11.41	□□□□□ -0.58
COPS6-208	ENST00000474823	SF3B1	O75533	1304 aa	Known RBP eCLIP	11.4	□□□□□ -0.58	7e-8	■■■■■ 30.2
COPS6-208	ENST00000474823	BICDL2	A1A5D9	508 aa		11.4	□□□□□ -0.58
COPS6-208	ENST00000474823	TMEM189-UBE2V1	I3L0A0	370 aa		11.4	□□□□□ -0.58
COPS6-208	ENST00000474823	KIF4A	O95239	1232 aa		11.4	□□□□□ -0.58
COPS6-208	ENST00000474823	NFIC	P08651	508 aa		11.4	□□□□□ -0.58
COPS6-208	ENST00000474823	TMEM191B	P0C7N4	346 aa		11.4	□□□□□ -0.58
COPS6-208	ENST00000474823	DNAJB1	P25685	340 aa		11.4	□□□□□ -0.58
COPS6-208	ENST00000474823	TFAM	Q00059	246 aa	Known RBP	11.4	□□□□□ -0.58
COPS6-208	ENST00000474823	LRRC63	Q05C16	580 aa		11.4	□□□□□ -0.58
COPS6-208	ENST00000474823	ADAM9	Q13443	819 aa		11.4	□□□□□ -0.58
COPS6-208	ENST00000474823	SMC1A	Q14683	1233 aa	Known RBP	11.4	□□□□□ -0.58
COPS6-208	ENST00000474823	ZBTB6	Q15916	424 aa		11.4	□□□□□ -0.58
COPS6-208	ENST00000474823	NFIL3	Q16649	462 aa		11.4	□□□□□ -0.58
COPS6-208	ENST00000474823	UPP1	Q16831	310 aa		11.4	□□□□□ -0.58
COPS6-208	ENST00000474823	EDRF1	Q3B7T1	1238 aa		11.4	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms