RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 SPTLC2O15270 562 aa19.6■□□□□ 0.73
UPF3A-203ENST00000474056 GLUD1P00367 558 aa19.6■□□□□ 0.73
UPF3A-203ENST00000474056 ZSCAN22P10073 491 aaPredicted RBP19.6■□□□□ 0.73
UPF3A-203ENST00000474056 MYBP10242 640 aa19.6■□□□□ 0.73
UPF3A-203ENST00000474056 MTHFRP42898 656 aa19.6■□□□□ 0.73
UPF3A-203ENST00000474056 LIG4P49917 911 aa19.6■□□□□ 0.73
UPF3A-203ENST00000474056 UPP1Q16831 310 aa19.6■□□□□ 0.73
UPF3A-203ENST00000474056 SLC10A6Q3KNW5 377 aa19.6■□□□□ 0.73
UPF3A-203ENST00000474056 FOXD4L6Q3SYB3 417 aaPredicted RBP19.6■□□□□ 0.73
UPF3A-203ENST00000474056 TMEM31Q5JXX7 168 aa19.6■□□□□ 0.73
UPF3A-203ENST00000474056 FOXD4L3Q6VB84 417 aaPredicted RBP19.6■□□□□ 0.73
UPF3A-203ENST00000474056 SFR1Q86XK3 245 aa19.6■□□□□ 0.73
UPF3A-203ENST00000474056 CEP57Q86XR8 500 aa19.6■□□□□ 0.73
UPF3A-203ENST00000474056 DDX12PQ92771 950 aa19.6■□□□□ 0.73
UPF3A-203ENST00000474056 RIPOR3Q96MK2 946 aa19.6■□□□□ 0.73
UPF3A-203ENST00000474056 UROC1Q96N76 676 aa19.6■□□□□ 0.73
UPF3A-203ENST00000474056 NECTIN4Q96NY8 510 aa19.6■□□□□ 0.73
UPF3A-203ENST00000474056 LRFN3Q9BTN0 628 aa19.6■□□□□ 0.73
UPF3A-203ENST00000474056 TTPALQ9BTX7 342 aa19.6■□□□□ 0.73
UPF3A-203ENST00000474056 PANK2Q9BZ23 570 aa19.6■□□□□ 0.73
UPF3A-203ENST00000474056 HNRNPDLO14979 420 aaKnown RBP19.59■□□□□ 0.73
UPF3A-203ENST00000474056 GPR37L1O60883 481 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 PPP6R2O75170 966 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 B3GAT3O94766 335 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 PIGRP01833 764 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 CXCL8P10145 99 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 KCNE1P15382 129 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 TNFSF9P41273 254 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 STAT6P42226 847 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 GTF2BQ00403 316 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 ELAVL2Q12926 359 aaKnown RBP19.59■□□□□ 0.73
UPF3A-203ENST00000474056 ZC2HC1CQ53FD0 456 aaPredicted RBP19.59■□□□□ 0.73
UPF3A-203ENST00000474056 HERC4Q5GLZ8 1057 aaPredicted RBP19.59■□□□□ 0.73
UPF3A-203ENST00000474056 SLC39A4Q6P5W5 647 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 DCLRE1AQ6PJP8 1040 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 CCDC73Q6ZRK6 1079 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 SV2BQ7L1I2 683 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 PALB2Q86YC2 1186 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 MAP4K3Q8IVH8 894 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 PDILTQ8N807 584 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 PIK3R5Q8WYR1 880 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 C18orf25Q96B23 403 aaPredicted RBP19.59■□□□□ 0.73
UPF3A-203ENST00000474056 DNAJC19Q96DA6 116 aa19.59■□□□□ 0.73
UPF3A-203ENST00000474056 PODXLO00592 558 aa19.58■□□□□ 0.72
UPF3A-203ENST00000474056 TGM5O43548 720 aa19.58■□□□□ 0.72
UPF3A-203ENST00000474056 YEATS4O95619 227 aa19.58■□□□□ 0.72
UPF3A-203ENST00000474056 SPATA31D3P0C874 917 aa19.58■□□□□ 0.72
UPF3A-203ENST00000474056 SCP2P22307 547 aa19.58■□□□□ 0.72
UPF3A-203ENST00000474056 BRCC3P46736 316 aa19.58■□□□□ 0.72
UPF3A-203ENST00000474056 CREMQ03060 361 aa19.58■□□□□ 0.72
UPF3A-203ENST00000474056 PSMD5Q16401 504 aa19.58■□□□□ 0.72
UPF3A-203ENST00000474056 ATAT1Q5SQI0 421 aa19.58■□□□□ 0.72
UPF3A-203ENST00000474056 ZBTB41Q5SVQ8 909 aa19.58■□□□□ 0.72
UPF3A-203ENST00000474056 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.58■□□□□ 0.72
UPF3A-203ENST00000474056 SPATA31D4Q6ZUB0 917 aa19.58■□□□□ 0.72
UPF3A-203ENST00000474056 GPR149Q86SP6 731 aa19.58■□□□□ 0.72
UPF3A-203ENST00000474056 LNX1Q8TBB1 728 aaPredicted RBP19.58■□□□□ 0.72
UPF3A-203ENST00000474056 TSHZ2Q9NRE2 1034 aa19.58■□□□□ 0.72
UPF3A-203ENST00000474056 SLC38A7Q9NVC3 462 aa19.58■□□□□ 0.72
UPF3A-203ENST00000474056 C2CD4DB7Z1M9 353 aa19.57■□□□□ 0.72
UPF3A-203ENST00000474056 I3L4J1 428 aa19.57■□□□□ 0.72
UPF3A-203ENST00000474056 FAM189A1O60320 539 aa19.57■□□□□ 0.72
UPF3A-203ENST00000474056 PDIA4P13667 645 aaKnown RBP19.57■□□□□ 0.72
UPF3A-203ENST00000474056 COL9A1P20849 921 aa19.57■□□□□ 0.72
UPF3A-203ENST00000474056 FGFR3P22607 806 aa19.57■□□□□ 0.72
UPF3A-203ENST00000474056 TMEM130Q8N3G9 435 aa19.57■□□□□ 0.72
UPF3A-203ENST00000474056 CLSTN3Q9BQT9 956 aa19.57■□□□□ 0.72
UPF3A-203ENST00000474056 ST6GALNAC4Q9H4F1 302 aa19.57■□□□□ 0.72
UPF3A-203ENST00000474056 NR2E1Q9Y466 385 aa19.57■□□□□ 0.72
UPF3A-203ENST00000474056 SCN1AP35498 2009 aa19.56■□□□□ 0.72
UPF3A-203ENST00000474056 TISP43B9A030 160 aa19.56■□□□□ 0.72
UPF3A-203ENST00000474056 ANKRD63C9JTQ0 380 aa19.56■□□□□ 0.72
UPF3A-203ENST00000474056 RFPL2O75678 378 aa19.56■□□□□ 0.72
UPF3A-203ENST00000474056 CLTAP09496 248 aa19.56■□□□□ 0.72
UPF3A-203ENST00000474056 TKTP29401 623 aaKnown RBP19.56■□□□□ 0.72
UPF3A-203ENST00000474056 SPAG1Q07617 926 aa19.56■□□□□ 0.72
UPF3A-203ENST00000474056 LILRA6Q6PI73 481 aa19.56■□□□□ 0.72
UPF3A-203ENST00000474056 C15orf39Q6ZRI6 1047 aa19.56■□□□□ 0.72
UPF3A-203ENST00000474056 ZNF720Q7Z2F6 126 aa19.56■□□□□ 0.72
UPF3A-203ENST00000474056 CMASQ8NFW8 434 aaPredicted RBP19.56■□□□□ 0.72
UPF3A-203ENST00000474056 DDX27Q96GQ7 796 aaKnown RBP19.56■□□□□ 0.72
UPF3A-203ENST00000474056 TBC1D7Q9P0N9 293 aa19.56■□□□□ 0.72
UPF3A-203ENST00000474056 TUBGCP4Q9UGJ1 667 aa19.56■□□□□ 0.72
UPF3A-203ENST00000474056 RAPGEFL1Q9UHV5 662 aa19.56■□□□□ 0.72
UPF3A-203ENST00000474056 CCDC195A0A1B0GUA6 201 aa19.55■□□□□ 0.72
UPF3A-203ENST00000474056 TTC26A0AVF1 554 aa19.55■□□□□ 0.72
UPF3A-203ENST00000474056 OGTO15294 1046 aa19.55■□□□□ 0.72
UPF3A-203ENST00000474056 ADAM12O43184 909 aa19.55■□□□□ 0.72
UPF3A-203ENST00000474056 CUTAO60888 179 aa19.55■□□□□ 0.72
UPF3A-203ENST00000474056 PPP1R37O75864 691 aa19.55■□□□□ 0.72
UPF3A-203ENST00000474056 ABCD1P33897 745 aa19.55■□□□□ 0.72
UPF3A-203ENST00000474056 SHC4Q6S5L8 630 aa19.55■□□□□ 0.72
UPF3A-203ENST00000474056 KREMEN2Q8NCW0 462 aa19.55■□□□□ 0.72
UPF3A-203ENST00000474056 STAMQ92783 540 aa19.55■□□□□ 0.72
UPF3A-203ENST00000474056 MSTO1Q9BUK6 570 aa19.55■□□□□ 0.72
UPF3A-203ENST00000474056 IKZF4Q9H2S9 585 aa19.55■□□□□ 0.72
UPF3A-203ENST00000474056 PLEKHA4Q9H4M7 779 aa19.55■□□□□ 0.72
UPF3A-203ENST00000474056 PLEKHA5Q9HAU0 1116 aa19.55■□□□□ 0.72
UPF3A-203ENST00000474056 SEL1LQ9UBV2 794 aa19.55■□□□□ 0.72
UPF3A-203ENST00000474056 DPP7Q9UHL4 492 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms