RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 RNF168Q8IYW5 571 aaPredicted RBP16.63■□□□□ 0.25
SDC3-203ENST00000471567 MRPL43Q8N983 215 aaKnown RBP16.63■□□□□ 0.25
SDC3-203ENST00000471567 KIAA0895Q8NCT3 520 aa16.63■□□□□ 0.25
SDC3-203ENST00000471567 VN1R3Q9BXE9 311 aa16.63■□□□□ 0.25
SDC3-203ENST00000471567 ADAM28Q9UKQ2 775 aa16.63■□□□□ 0.25
SDC3-203ENST00000471567 COG5Q9UP83 839 aa16.63■□□□□ 0.25
SDC3-203ENST00000471567 DERAQ9Y315 318 aa16.63■□□□□ 0.25
SDC3-203ENST00000471567 IRAK3Q9Y616 596 aa16.63■□□□□ 0.25
SDC3-203ENST00000471567 TRIP11Q15643 1979 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 FSD2A1L4K1 749 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 TGFB1I1O43294 461 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 XPOTO43592 962 aaKnown RBP16.62■□□□□ 0.25
SDC3-203ENST00000471567 EXTL3O43909 919 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 CSPG5O95196 566 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 SMC2O95347 1197 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 CXCL14O95715 111 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 SOD2P04179 222 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 CYP3A5P20815 502 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 ELAVL2Q12926 359 aaKnown RBP16.62■□□□□ 0.25
SDC3-203ENST00000471567 COL19A1Q14993 1142 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 SKIV2LQ15477 1246 aaKnown RBP16.62■□□□□ 0.25
SDC3-203ENST00000471567 UPP1Q16831 310 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 PLPP4Q5VZY2 271 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 NELFCDQ8IXH7 590 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 GPR65Q8IYL9 337 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 GOLGA5Q8TBA6 731 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 KIF12Q96FN5 646 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 GSDMAQ96QA5 445 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 CDCA3Q99618 268 aaPredicted RBP16.62■□□□□ 0.25
SDC3-203ENST00000471567 PAAF1Q9BRP4 392 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 CBWD1Q9BRT8 395 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 HERC2P3Q9BVR0 1158 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 TLE6Q9H808 572 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 KIAA1586Q9HCI6 787 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 AGPAT3Q9NRZ7 376 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 RMND1Q9NWS8 449 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 UBQLN1Q9UMX0 589 aaKnown RBP16.62■□□□□ 0.25
SDC3-203ENST00000471567 SSX2IPQ9Y2D8 614 aa16.62■□□□□ 0.25
SDC3-203ENST00000471567 C2orf71A6NGG8 1288 aa16.61■□□□□ 0.25
SDC3-203ENST00000471567 F8W810 466 aa16.61■□□□□ 0.25
SDC3-203ENST00000471567 PRPF40AO75400 957 aaKnown RBP16.61■□□□□ 0.25
SDC3-203ENST00000471567 KIF4AO95239 1232 aa16.61■□□□□ 0.25
SDC3-203ENST00000471567 IL18RAPO95256 599 aa16.61■□□□□ 0.25
SDC3-203ENST00000471567 CLCNKBP51801 687 aa16.61■□□□□ 0.25
SDC3-203ENST00000471567 SOX4Q06945 474 aaPredicted RBP16.61■□□□□ 0.25
SDC3-203ENST00000471567 HYAL1Q12794 435 aa16.61■□□□□ 0.25
SDC3-203ENST00000471567 PNOCQ13519 176 aa16.61■□□□□ 0.25
SDC3-203ENST00000471567 FUT10Q6P4F1 479 aa16.61■□□□□ 0.25
SDC3-203ENST00000471567 ADGRD2Q7Z7M1 963 aa16.61■□□□□ 0.25
SDC3-203ENST00000471567 C12orf56Q8IXR9 622 aa16.61■□□□□ 0.25
SDC3-203ENST00000471567 GPD1LQ8N335 351 aa16.61■□□□□ 0.25
SDC3-203ENST00000471567 SPATA20Q8TB22 786 aa16.61■□□□□ 0.25
SDC3-203ENST00000471567 FAM213AQ9BRX8 229 aa16.61■□□□□ 0.25
SDC3-203ENST00000471567 GTPBP4Q9BZE4 634 aaKnown RBP16.61■□□□□ 0.25
SDC3-203ENST00000471567 PCIF1Q9H4Z3 704 aa16.61■□□□□ 0.25
SDC3-203ENST00000471567 CACNG4Q9UBN1 327 aa16.61■□□□□ 0.25
SDC3-203ENST00000471567 C2CD2Q9Y426 696 aa16.61■□□□□ 0.25
SDC3-203ENST00000471567 PCDHGC5Q9Y5F6 944 aa16.61■□□□□ 0.25
SDC3-203ENST00000471567 SF3B1O75533 1304 aaKnown RBP eCLIP16.61■□□□□ 0.254e-6■■■■■ 88.1
SDC3-203ENST00000471567 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.6■□□□□ 0.25
SDC3-203ENST00000471567 HIDE1A8MVS5 230 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 B3GAT3O94766 335 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 LRPAP1P30533 357 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 DUSP6Q16828 381 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 USP41Q3LFD5 358 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 NT5DC4Q86YG4 428 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 BRSK2Q8IWQ3 736 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 EFHBQ8N7U6 833 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 TMEM174Q8WUU8 243 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 RABGGTAQ92696 567 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 HLA-CQ95604 372 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 C18orf25Q96B23 403 aaPredicted RBP16.6■□□□□ 0.25
SDC3-203ENST00000471567 PABPC5Q96DU9 382 aaKnown RBP16.6■□□□□ 0.25
SDC3-203ENST00000471567 FAM212AQ96EL1 285 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 SAAL1Q96ER3 474 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 FBXL18Q96ME1 805 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 GPR62Q9BZJ7 368 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 GOLGA2P5Q9HBQ8 144 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 MRPL17Q9NRX2 175 aaKnown RBP16.6■□□□□ 0.25
SDC3-203ENST00000471567 CHST7Q9NS84 486 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 HSPBP1Q9NZL4 362 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 ATG2AQ2TAZ0 1938 aa16.6■□□□□ 0.25
SDC3-203ENST00000471567 ZNF233A6NK53 670 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 PODXLO00592 558 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 PDXKO00764 312 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 TRAPPC3O43617 180 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 LILRB3O75022 631 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 URODP06132 367 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 NRIP1P48552 1158 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 GLUD2P49448 558 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 DSG1Q02413 1049 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 SPAG1Q07617 926 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 ADAM15Q13444 863 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 TMEM132DQ14C87 1099 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 PTPN14Q15678 1187 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 CTC1Q2NKJ3 1217 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 KIAA0319Q5VV43 1072 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 SPATA1Q5VX52 437 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 JADE1Q6IE81 842 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 CD300LGQ6UXG3 332 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms