RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 ZMYM2Q9UBW7 1377 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 DENND3A2RUS2 1198 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 K7ENM7 598 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 GYPCP04921 128 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 ITGB1P05556 798 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 STAG3L1P0CL83 205 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 DNAJB1P25685 340 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 GTF2F1P35269 517 aaKnown RBP eCLIP12.81□□□□□ -0.36
USP54-209ENST00000464635 EFNA5P52803 228 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 PEX3P56589 373 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 ZBED6P86452 979 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 CDC42EP1Q00587 391 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 HYAL1Q12794 435 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 DSC3Q14574 896 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 COL19A1Q14993 1142 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 EMC2Q15006 297 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 MTERF2Q49AM1 385 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 FAM102BQ5T8I3 360 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 EP400NLQ6ZTU2 488 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 INTS8Q75QN2 995 aaKnown RBP12.81□□□□□ -0.36
USP54-209ENST00000464635 TMEM139Q8IV31 216 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 FMNL3Q8IVF7 1028 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 OR8K1Q8NGG5 319 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 SYN2Q92777 582 aaPredicted RBP12.81□□□□□ -0.36
USP54-209ENST00000464635 PABPC5Q96DU9 382 aaKnown RBP12.81□□□□□ -0.36
USP54-209ENST00000464635 FBXL18Q96ME1 805 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 DNAJC7Q99615 494 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 BAG1Q99933 345 aaPredicted RBP12.81□□□□□ -0.36
USP54-209ENST00000464635 LMAN2LQ9H0V9 348 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 RGS18Q9NS28 235 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 SIK3Q9Y2K2 1263 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 USP20Q9Y2K6 914 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 LUC7L2Q9Y383 392 aaKnown RBP12.81□□□□□ -0.36
USP54-209ENST00000464635 PCDHGC5Q9Y5F6 944 aa12.81□□□□□ -0.36
USP54-209ENST00000464635 GOLGA6L9A6NEM1 432 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 TBKBP1A7MCY6 615 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 KIF2AO00139 706 aaPredicted RBP12.8□□□□□ -0.36
USP54-209ENST00000464635 GPR182O15218 404 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 AKAP3O75969 853 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 FGFR1P11362 822 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 FGFR4P22455 802 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 IRS1P35568 1242 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 GPC3P51654 580 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 POU5F1Q01860 360 aaKnown RBP12.8□□□□□ -0.36
USP54-209ENST00000464635 DLX2Q07687 328 aaPredicted RBP12.8□□□□□ -0.36
USP54-209ENST00000464635 MEA1Q16626 185 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 TSR1Q2NL82 804 aaKnown RBP12.8□□□□□ -0.36
USP54-209ENST00000464635 ZC2HC1CQ53FD0 456 aaPredicted RBP12.8□□□□□ -0.36
USP54-209ENST00000464635 PLA2G4FQ68DD2 849 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 SLFN12LQ6IEE8 588 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 PTCRAQ6ISU1 281 aaPredicted RBP12.8□□□□□ -0.36
USP54-209ENST00000464635 SLC24A5Q71RS6 500 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 ADGRD2Q7Z7M1 963 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 USP37Q86T82 979 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 SYCP3Q8IZU3 236 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 KLHL23Q8NBE8 558 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 ZNF830Q96NB3 372 aaPredicted RBP12.8□□□□□ -0.36
USP54-209ENST00000464635 MAP7D2Q96T17 732 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 PLVAPQ9BX97 442 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 C1orf112Q9NSG2 853 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 RNF19AQ9NV58 838 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 CLDND1Q9NY35 253 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 RAPGEFL1Q9UHV5 662 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 PLAGL2Q9UPG8 496 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 PCDHB7Q9Y5E2 793 aa12.8□□□□□ -0.36
USP54-209ENST00000464635 LINC01565O15544 149 aa12.79□□□□□ -0.36
USP54-209ENST00000464635 N4BP1O75113 896 aaKnown RBP12.79□□□□□ -0.36
USP54-209ENST00000464635 CSDE1O75534 798 aaKnown RBP12.79□□□□□ -0.36
USP54-209ENST00000464635 LDHAP00338 332 aaKnown RBP12.79□□□□□ -0.36
USP54-209ENST00000464635 AFPP02771 609 aaKnown RBP12.79□□□□□ -0.36
USP54-209ENST00000464635 CASP14P31944 242 aa12.79□□□□□ -0.36
USP54-209ENST00000464635 LTBRP36941 435 aa12.79□□□□□ -0.36
USP54-209ENST00000464635 KCNA1Q09470 495 aa12.79□□□□□ -0.36
USP54-209ENST00000464635 KCNH2Q12809 1159 aa12.79□□□□□ -0.36
USP54-209ENST00000464635 LRMPQ12912 555 aa12.79□□□□□ -0.36
USP54-209ENST00000464635 CYP26C1Q6V0L0 522 aa12.79□□□□□ -0.36
USP54-209ENST00000464635 IFNLR1Q8IU57 520 aaPredicted RBP12.79□□□□□ -0.36
USP54-209ENST00000464635 XXYLT1Q8NBI6 393 aa12.79□□□□□ -0.36
USP54-209ENST00000464635 SPPL3Q8TCT6 385 aa12.79□□□□□ -0.36
USP54-209ENST00000464635 C2orf40Q9H1Z8 148 aa12.79□□□□□ -0.36
USP54-209ENST00000464635 EPHX3Q9H6B9 360 aa12.79□□□□□ -0.36
USP54-209ENST00000464635 ABHD10Q9NUJ1 306 aa12.79□□□□□ -0.36
USP54-209ENST00000464635 C5orf42Q9H799 3197 aa12.79□□□□□ -0.36
USP54-209ENST00000464635 TTC26A0AVF1 554 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 GRXCR2A6NFK2 248 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 ZSCAN12O43309 604 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 TBX10O75333 385 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 DARSP14868 501 aaKnown RBP12.78□□□□□ -0.36
USP54-209ENST00000464635 TRIM21P19474 475 aaKnown RBP12.78□□□□□ -0.36
USP54-209ENST00000464635 RFX1P22670 979 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 EIF4BP23588 611 aaKnown RBP12.78□□□□□ -0.36
USP54-209ENST00000464635 TMOD1P28289 359 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 GTF2H1P32780 548 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 KRT9P35527 623 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 FAM189BP81408 668 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 SYCP1Q15431 976 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 CLUL1Q15846 466 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 CTC1Q2NKJ3 1217 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 CDCA2Q69YH5 1023 aaPredicted RBP12.78□□□□□ -0.36
USP54-209ENST00000464635 ZPBP2Q6X784 338 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms