RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	AFG1L	Q8WV93	481 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004		A0A087X0B3	334 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	LAMTOR4	Q0VGL1	99 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	FAM110C	Q1W6H9	321 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	RGMB	Q6NW40	437 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	CENPU	Q71F23	418 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	DCP1B	Q8IZD4	617 aa	Known RBP	12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	CNOT10	Q9H9A5	744 aa	Known RBP	12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	AFG3L2	Q9Y4W6	797 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004		I3L4J1	428 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	CDR2	Q01850	454 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	GCNT1	Q02742	428 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	PSMD6	Q15008	389 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	SMC6	Q96SB8	1091 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	DUSP9	Q99956	384 aa	Known RBP	12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	KLC2	Q9H0B6	622 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	ITGB4	P16144	1822 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004		H3BRJ5	948 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	KLRC4	O43908	158 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	USP2	O75604	605 aa	Predicted RBP	12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	STAG3L1	P0CL83	205 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	KRT3	P12035	628 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	UBA1	P22314	1058 aa	Known RBP	12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	PSMC6	P62333	389 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	ZNF394	Q53GI3	561 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	CDKL3	Q8IVW4	592 aa	Predicted RBP	12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	DNAJC19	Q96DA6	116 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	DDX27	Q96GQ7	796 aa	Known RBP	12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	TINF2	Q9BSI4	451 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	NHS	Q6T4R5	1651 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	AP3B1	O00203	1094 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	AKAP3	O75969	853 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	SETSIP	P0DME0	302 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	HPD	P32754	393 aa	Predicted RBP	12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	C2orf54	Q08AI8	447 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	NR1H3	Q13133	447 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	CFAP157	Q5JU67	520 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	LRRC31	Q6UY01	552 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	C4orf22	Q6V702	233 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	AMIGO3	Q86WK7	504 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	CFAP69	A5D8W1	941 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	NDUFAB1	O14561	156 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	RNF40	O75150	1001 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	IFRD2	Q12894	506 aa	Predicted RBP	12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	NOG	Q13253	232 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	HPDL	Q96IR7	371 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	PPP1R2P1	Q96PQ5	205 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	KCND1	Q9NSA2	647 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	ITGA11	Q9UKX5	1188 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	DSE	Q9UL01	958 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	INPP5F	Q9Y2H2	1132 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	VIM	P08670	466 aa	Known RBP	12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	INSRR	P14616	1297 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	EFHC2	Q5JST6	749 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	ACAD10	Q6JQN1	1059 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	BRSK2	Q8IWQ3	736 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	PDE11A	Q9HCR9	933 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	CPA4	Q9UI42	421 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	SNX9	Q9Y5X1	595 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	SNED1	Q8TER0	1413 aa		12.49	□□□□□ -0.41
RBM39-223	ENST00000463004	MYH3	P11055	1940 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	ABL1	P00519	1130 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	VDR	P11473	427 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	ADCY2	Q08462	1091 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	MAP2K5	Q13163	448 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	TBX2	Q13207	712 aa	Predicted RBP	12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	NYAP1	Q6ZVC0	841 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	CTAGE3P	Q8IX95	158 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	TMEM106C	Q9BVX2	250 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	ST6GALNAC4	Q9H4F1	302 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	DNAJC18	Q9H819	358 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	VAV3	Q9UKW4	847 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004		F8W8V4	182 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	ACTN1	P12814	892 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	CXCR5	P32302	372 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	MRPS9	P82933	396 aa	Known RBP	12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	GRIK4	Q16099	956 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	EFHC1	Q5JVL4	640 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	FAM102A	Q5T9C2	384 aa	Predicted RBP	12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	C4orf50	Q6ZRC1	276 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	UPF1	Q92900	1129 aa	Known RBP eCLIP	12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	DDX50	Q9BQ39	737 aa	Known RBP	12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	SH2D3A	Q9BRG2	576 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	CARD9	Q9H257	536 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	GPRC5C	Q9NQ84	441 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	MID2	Q9UJV3	735 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	NAGPA	Q9UK23	515 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	NRCAM	Q92823	1304 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	ITGB5	P18084	799 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	KPNA2	P52292	529 aa	Known RBP	12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	PLTP	P55058	493 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	C6orf118	Q5T5N4	469 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	ADAT2	Q7Z6V5	191 aa	Known RBP	12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	CBWD2	Q8IUF1	395 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	VCPIP1	Q96JH7	1222 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	CBWD1	Q9BRT8	395 aa		12.48	□□□□□ -0.41
RBM39-223	ENST00000463004	ZBTB24	O43167	697 aa	Predicted RBP	12.47	□□□□□ -0.41
RBM39-223	ENST00000463004	RALA	P11233	206 aa		12.47	□□□□□ -0.41
RBM39-223	ENST00000463004	MARS	P56192	900 aa	Known RBP	12.47	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms