RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 EMC2Q15006 297 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 E2F5Q15329 346 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 ZNF667Q5HYK9 610 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 OR6B2Q6IFH4 312 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 FAM47EQ6ZV65 393 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 ENOSF1Q7L5Y1 443 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 RHOT1Q8IXI2 618 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 ATG4AQ8WYN0 398 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.38□□□□□ -0.43
NPHP4-204ENST00000460696 EPN3Q9H201 632 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 RPF1Q9H9Y2 349 aaKnown RBP12.38□□□□□ -0.43
NPHP4-204ENST00000460696 VAV3Q9UKW4 847 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 SIPA1L3O60292 1781 aaPredicted RBP12.38□□□□□ -0.43
NPHP4-204ENST00000460696 MYH3P11055 1940 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 GGPS1O95749 300 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 CYP11B1P15538 503 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 ARHGEF6Q15052 776 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 NT5DC3Q86UY8 548 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 KCTD6Q8NC69 237 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 RBM46Q8TBY0 533 aaKnown RBP12.38□□□□□ -0.43
NPHP4-204ENST00000460696 ZNF473Q8WTR7 871 aaKnown RBP12.38□□□□□ -0.43
NPHP4-204ENST00000460696 TATDN2Q93075 761 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 TBC1D31Q96DN5 1066 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 HEXIM2Q96MH2 286 aaKnown RBP12.38□□□□□ -0.43
NPHP4-204ENST00000460696 SMC6Q96SB8 1091 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 TIPINQ9BVW5 301 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 MRIQ9BWK5 157 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 N4BP2Q86UW6 1770 aaPredicted RBP12.38□□□□□ -0.43
NPHP4-204ENST00000460696 MYH10P35580 1976 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 P4HA2O15460 535 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 CYP2C8P10632 490 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 CA4P22748 312 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 MAPK7Q13164 816 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 LONRF1Q17RB8 773 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 PHLDB3Q6NSJ2 640 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 AADACL2Q6P093 401 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 HSPH1Q92598 858 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 FAM84AQ96KN4 292 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 ZSWIM1Q9BR11 485 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 PCDHB2Q9Y5E7 798 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 CALCAP01258 141 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 BRAFP15056 766 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 ABCD1P33897 745 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 SLC8A3P57103 927 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 NCOA4Q13772 614 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 SPC25Q9HBM1 224 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 NGRNQ9NPE2 291 aaKnown RBP12.37□□□□□ -0.43
NPHP4-204ENST00000460696 MAD1L1Q9Y6D9 718 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 MYH8P13535 1937 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 TJP3O95049 919 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 PHBP35232 272 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 IL9RQ01113 521 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 SNAPC2Q13487 334 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 KYNUQ16719 465 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 SPOPLQ6IQ16 392 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 SLC13A5Q86YT5 568 aaPredicted RBP12.37□□□□□ -0.43
NPHP4-204ENST00000460696 LRRC71Q8N4P6 559 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 RBBP8NLQ8NC74 664 aaPredicted RBP12.37□□□□□ -0.43
NPHP4-204ENST00000460696 LRRC8CQ8TDW0 803 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 MORC4Q8TE76 937 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 CAVIN3Q969G5 261 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 JPH2Q9BR39 696 aaPredicted RBP12.37□□□□□ -0.43
NPHP4-204ENST00000460696 GGT7Q9UJ14 662 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 PNMA3Q9UL41 463 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 RASA4BC9J798 803 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 RASA4O43374 803 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 AARSP49588 968 aaKnown RBP eCLIP12.37□□□□□ -0.43
NPHP4-204ENST00000460696 GPS1Q13098 491 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 NEDD9Q14511 834 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 PGM5Q15124 567 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 IZUMO3Q5VZ72 239 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 PCNX4Q63HM2 1172 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 ZNF784Q8NCA9 323 aaPredicted RBP12.37□□□□□ -0.43
NPHP4-204ENST00000460696 LNX1Q8TBB1 728 aaPredicted RBP12.37□□□□□ -0.43
NPHP4-204ENST00000460696 NLRP7Q8WX94 980 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 FAM149B1Q96BN6 582 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 RANBP17Q9H2T7 1088 aaKnown RBP12.37□□□□□ -0.43
NPHP4-204ENST00000460696 GTF3C4Q9UKN8 822 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 IGSF9BQ9UPX0 1349 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 MYO5AQ9Y4I1 1855 aaKnown RBP12.37□□□□□ -0.43
NPHP4-204ENST00000460696 PRKCIP41743 596 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 BYSLQ13895 437 aaKnown RBP12.37□□□□□ -0.43
NPHP4-204ENST00000460696 ARHGEF18Q6ZSZ5 1173 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 USP50Q70EL3 339 aaPredicted RBP12.37□□□□□ -0.43
NPHP4-204ENST00000460696 FAM83AQ86UY5 434 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 KRT35Q92764 455 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 CYP26B1Q9NR63 512 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 PXMP2Q9NR77 195 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 FBXO40Q9UH90 709 aa12.37□□□□□ -0.43
NPHP4-204ENST00000460696 TAF1P21675 1872 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 DOT1LQ8TEK3 1739 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 PIK3CDO00329 1044 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 ATP9AO75110 1047 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 TOMM70O94826 608 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 WEE2P0C1S8 567 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 MUTP22033 750 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 RRM1P23921 792 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 TBXAS1P24557 533 aaPredicted RBP12.36□□□□□ -0.43
NPHP4-204ENST00000460696 NOP14P78316 857 aaKnown RBP12.36□□□□□ -0.43
NPHP4-204ENST00000460696 CDR2Q01850 454 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms