RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 HERC6Q8IVU3 1022 aa11.03□□□□□ -0.64
UPF2-204ENST00000460569 EFCAB13Q8IY85 973 aa11.03□□□□□ -0.64
UPF2-204ENST00000460569 LRRC43Q8N309 656 aa11.03□□□□□ -0.64
UPF2-204ENST00000460569 PHOSPHO2Q8TCD6 241 aa11.03□□□□□ -0.64
UPF2-204ENST00000460569 PLEKHO2Q8TD55 490 aa11.03□□□□□ -0.64
UPF2-204ENST00000460569 TMC2Q8TDI7 906 aa11.03□□□□□ -0.64
UPF2-204ENST00000460569 PARD3BQ8TEW8 1205 aa11.03□□□□□ -0.64
UPF2-204ENST00000460569 CASD1Q96PB1 797 aa11.03□□□□□ -0.64
UPF2-204ENST00000460569 CGRRF1Q99675 332 aa11.03□□□□□ -0.64
UPF2-204ENST00000460569 MRPL9Q9BYD2 267 aaKnown RBP11.03□□□□□ -0.64
UPF2-204ENST00000460569 ASB7Q9H672 318 aa11.03□□□□□ -0.64
UPF2-204ENST00000460569 MMRN2Q9H8L6 949 aa11.03□□□□□ -0.64
UPF2-204ENST00000460569 PLAGL2Q9UPG8 496 aa11.03□□□□□ -0.64
UPF2-204ENST00000460569 NLRC5Q86WI3 1866 aa11.03□□□□□ -0.64
UPF2-204ENST00000460569 PTPRJQ12913 1337 aa11.03□□□□□ -0.64
UPF2-204ENST00000460569 SMIM28A0A1B0GU29 152 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 LRRIQ3A6PVS8 624 aaPredicted RBP11.02□□□□□ -0.65
UPF2-204ENST00000460569 INPPL1O15357 1258 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 XPOTO43592 962 aaKnown RBP11.02□□□□□ -0.65
UPF2-204ENST00000460569 TLL1O43897 1013 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 THP07101 528 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 TMEM191BP0C7N4 346 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 KCNE1P15382 129 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 CDK11BP21127 795 aaKnown RBP11.02□□□□□ -0.65
UPF2-204ENST00000460569 EEF1GP26641 437 aaKnown RBP11.02□□□□□ -0.65
UPF2-204ENST00000460569 MARSP56192 900 aaKnown RBP11.02□□□□□ -0.65
UPF2-204ENST00000460569 DLG4P78352 724 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 BTG3Q14201 252 aaPredicted RBP11.02□□□□□ -0.65
UPF2-204ENST00000460569 XKR4Q5GH76 650 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 ALKAL1Q6UXT8 129 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 WDR49Q8IV35 697 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 TDHQ8IZJ6 230 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 GSTCDQ8NEC7 633 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 ANKRD20A12PQ8NF67 263 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 RSPH1Q8WYR4 309 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 BORCS6Q96GS4 357 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 ANKRD36BP1Q96IX9 119 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 FAM84AQ96KN4 292 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 ZMAT2Q96NC0 199 aaKnown RBP11.02□□□□□ -0.65
UPF2-204ENST00000460569 FAM193BQ96PV7 902 aaPredicted RBP11.02□□□□□ -0.65
UPF2-204ENST00000460569 PPP1R10Q96QC0 940 aaKnown RBP11.02□□□□□ -0.65
UPF2-204ENST00000460569 POP1Q99575 1024 aaKnown RBP11.02□□□□□ -0.65
UPF2-204ENST00000460569 MTMR12Q9C0I1 747 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 RC3H2Q9HBD1 1191 aaKnown RBP11.02□□□□□ -0.65
UPF2-204ENST00000460569 SLC38A7Q9NVC3 462 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 TBC1D13Q9NVG8 400 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 MIOSQ9NXC5 875 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 KANSL3Q9P2N6 904 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 TUBGCP4Q9UGJ1 667 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 UBQLN1Q9UMX0 589 aaKnown RBP11.02□□□□□ -0.65
UPF2-204ENST00000460569 DERAQ9Y315 318 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 C2CD2Q9Y426 696 aa11.02□□□□□ -0.65
UPF2-204ENST00000460569 GRXCR1A8MXD5 290 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 TNNC2P02585 160 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 PRKCSHP14314 528 aaPredicted RBP11.01□□□□□ -0.65
UPF2-204ENST00000460569 ZNF18P17022 549 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 GUCY2FP51841 1108 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 RABGGTBP53611 331 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 TCP11X2Q5H9J9 407 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 C1orf220Q5T0J3 134 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 SPOUT1Q5T280 376 aaKnown RBP11.01□□□□□ -0.65
UPF2-204ENST00000460569 FAM109BQ6ICB4 259 aaPredicted RBP11.01□□□□□ -0.65
UPF2-204ENST00000460569 GAS2L3Q86XJ1 694 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 NT5DC4Q86YG4 428 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 TRIM59Q8IWR1 403 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 CMTR2Q8IYT2 770 aaKnown RBP11.01□□□□□ -0.65
UPF2-204ENST00000460569 BEST2Q8NFU1 509 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 OR5B17Q8NGF7 314 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 CACTINQ8WUQ7 758 aaKnown RBP11.01□□□□□ -0.65
UPF2-204ENST00000460569 SLC35C1Q96A29 364 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 C18orf25Q96B23 403 aaPredicted RBP11.01□□□□□ -0.65
UPF2-204ENST00000460569 ZNF689Q96CS4 500 aaPredicted RBP11.01□□□□□ -0.65
UPF2-204ENST00000460569 TSPAN18Q96SJ8 248 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 HSD3B7Q9H2F3 369 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 GOLGA2P5Q9HBQ8 144 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 INTS13Q9NVM9 706 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 TAB2Q9NYJ8 693 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 HCSTQ9UBK5 93 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 INSL6Q9Y581 213 aa11.01□□□□□ -0.65
UPF2-204ENST00000460569 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.01□□□□□ -0.65
UPF2-204ENST00000460569 CASTOR2A6NHX0 329 aa11□□□□□ -0.65
UPF2-204ENST00000460569 PES1O00541 588 aaKnown RBP11□□□□□ -0.65
UPF2-204ENST00000460569 STX10O60499 249 aa11□□□□□ -0.65
UPF2-204ENST00000460569 B4GALT3O60512 393 aa11□□□□□ -0.65
UPF2-204ENST00000460569 ZC3H11AO75152 810 aaKnown RBP eCLIP11□□□□□ -0.65
UPF2-204ENST00000460569 PHACTR2O75167 634 aa11□□□□□ -0.65
UPF2-204ENST00000460569 TPM2P07951 284 aa11□□□□□ -0.65
UPF2-204ENST00000460569 ATP1A3P13637 1013 aa11□□□□□ -0.65
UPF2-204ENST00000460569 GCLMP48507 274 aa11□□□□□ -0.65
UPF2-204ENST00000460569 HTRA4P83105 476 aaPredicted RBP11□□□□□ -0.65
UPF2-204ENST00000460569 SOX4Q06945 474 aaPredicted RBP11□□□□□ -0.65
UPF2-204ENST00000460569 ENPEPQ07075 957 aa11□□□□□ -0.65
UPF2-204ENST00000460569 TUSC3Q13454 348 aa11□□□□□ -0.65
UPF2-204ENST00000460569 BIRC3Q13489 604 aa11□□□□□ -0.65
UPF2-204ENST00000460569 KRT31Q15323 416 aa11□□□□□ -0.65
UPF2-204ENST00000460569 NAB2Q15742 525 aa11□□□□□ -0.65
UPF2-204ENST00000460569 MAN2A1Q16706 1144 aa11□□□□□ -0.65
UPF2-204ENST00000460569 DUOXA2Q1HG44 320 aa11□□□□□ -0.65
UPF2-204ENST00000460569 ZNF280BQ86YH2 543 aa11□□□□□ -0.65
UPF2-204ENST00000460569 TMEM130Q8N3G9 435 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms