RNA–Protein interactions for RNA: ENST00000457745.1

RIF1-208, Transcript of replication timing regulatory factor 1, human

TSL 1 (best)

Gene RIF1, Length 1,006 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-208	ENST00000457745	SIX4	Q9UIU6	781 aa		9.47	□□□□□ -0.89
RIF1-208	ENST00000457745	TRPV2	Q9Y5S1	764 aa		9.47	□□□□□ -0.89
RIF1-208	ENST00000457745	SCN1A	P35498	2009 aa		9.47	□□□□□ -0.89
RIF1-208	ENST00000457745	TANC1	Q9C0D5	1861 aa		9.47	□□□□□ -0.89
RIF1-208	ENST00000457745		A0A1W2PQJ5	194 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	RCCD1	A6NED2	376 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	GOLGA6L6	A8MZA4	724 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	CST3	P01034	146 aa	Predicted RBP	9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	TPM3	P06753	285 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	HSPA1A	P0DMV8	641 aa	Known RBP	9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	HSPA1B	P0DMV9	641 aa	Known RBP	9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	MCF2	P10911	925 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	GHR	P10912	638 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	TRIM21	P19474	475 aa	Known RBP	9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	EIF4B	P23588	611 aa	Known RBP	9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	CD52	P31358	61 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	THPO	P40225	353 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	CDK7	P50613	346 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	CRYBB1	P53674	252 aa	Predicted RBP	9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	ZBED6	P86452	979 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	LPIN1	Q14693	890 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	ASTE1	Q2TB18	679 aa	Predicted RBP	9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	ZACN	Q401N2	412 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	ZNF618	Q5T7W0	954 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	JADE1	Q6IE81	842 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	SLFN12L	Q6IEE8	588 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	GBP6	Q6ZN66	633 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	RNF180	Q86T96	592 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	REXO1L1P	Q8IX06	675 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	NEK11	Q8NG66	645 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	VWCE	Q96DN2	955 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	ZNF333	Q96JL9	665 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	BAG1	Q99933	345 aa	Predicted RBP	9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	SYT11	Q9BT88	431 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	TCHP	Q9BT92	498 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	GCOM2	Q9BZD3	368 aa	Predicted RBP	9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	SPC25	Q9HBM1	224 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	TMEM8A	Q9HCN3	771 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	SPTLC3	Q9NUV7	552 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	TRMT1	Q9NXH9	659 aa	Known RBP	9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	SNTG2	Q9NY99	539 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	CEP72	Q9P209	647 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	TRIM10	Q9UDY6	481 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	DNAJC12	Q9UKB3	198 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	OGDHL	Q9ULD0	1010 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	COQ4	Q9Y3A0	265 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	ALPK3	Q96L96	1907 aa		9.46	□□□□□ -0.9
RIF1-208	ENST00000457745	GTPBP10	A4D1E9	387 aa	Known RBP	9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	ATF7	P17544	494 aa	Predicted RBP	9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	AKAP5	P24588	427 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	HNRNPH3	P31942	346 aa	Known RBP	9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	ARHGAP25	P42331	645 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	PPP2R3A	Q06190	1150 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	SOX4	Q06945	474 aa	Predicted RBP	9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	RAPGEF1	Q13905	1077 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	DSC3	Q14574	896 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	SLC9C1	Q4G0N8	1177 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	GLRA4	Q5JXX5	417 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	FBXO47	Q5MNV8	452 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	TAF2	Q6P1X5	1199 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	IRF2BP2	Q7Z5L9	587 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	CTU1	Q7Z7A3	348 aa	Known RBP	9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	PALB2	Q86YC2	1186 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	FAM126B	Q8IXS8	530 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	CCAR2	Q8N163	923 aa	Known RBP	9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	UBR7	Q8N806	425 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	PCSK9	Q8NBP7	692 aa	Known RBP	9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	OR8K1	Q8NGG5	319 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	LNX1	Q8TBB1	728 aa	Predicted RBP	9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	SLC20A1	Q8WUM9	679 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	LPP	Q93052	612 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	C18orf25	Q96B23	403 aa	Predicted RBP	9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	PRIMPOL	Q96LW4	560 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	TSEN34	Q9BSV6	310 aa	Known RBP	9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	BEGAIN	Q9BUH8	593 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	APOL6	Q9BWW8	343 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	RNF208	Q9H0X6	261 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	SDCBP2	Q9H190	292 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	KLK14	Q9P0G3	267 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	TUBGCP4	Q9UGJ1	667 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	NENF	Q9UMX5	172 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	POLI	Q9UNA4	740 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	ST3GAL5	Q9UNP4	418 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	PLAGL2	Q9UPG8	496 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	PIN4	Q9Y237	131 aa	Known RBP	9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	LUC7L2	Q9Y383	392 aa	Known RBP	9.45	□□□□□ -0.9
RIF1-208	ENST00000457745	NUB1	Q9Y5A7	615 aa		9.45	□□□□□ -0.9
RIF1-208	ENST00000457745		A0A0U1RQG5	324 aa	Predicted RBP	9.44	□□□□□ -0.9
RIF1-208	ENST00000457745	MOXD2P	A6NHM9	499 aa		9.44	□□□□□ -0.9
RIF1-208	ENST00000457745		F8VZ95	297 aa		9.44	□□□□□ -0.9
RIF1-208	ENST00000457745	ARVCF	O00192	962 aa		9.44	□□□□□ -0.9
RIF1-208	ENST00000457745	FOXN3	O00409	490 aa	Predicted RBP	9.44	□□□□□ -0.9
RIF1-208	ENST00000457745	PMM2	O15305	246 aa		9.44	□□□□□ -0.9
RIF1-208	ENST00000457745	B4GALT3	O60512	393 aa		9.44	□□□□□ -0.9
RIF1-208	ENST00000457745	RECQL4	O94761	1208 aa		9.44	□□□□□ -0.9
RIF1-208	ENST00000457745	GFPT2	O94808	682 aa		9.44	□□□□□ -0.9
RIF1-208	ENST00000457745	ERLIN2	O94905	339 aa		9.44	□□□□□ -0.9
RIF1-208	ENST00000457745	CD4	P01730	458 aa		9.44	□□□□□ -0.9
RIF1-208	ENST00000457745	TPM2	P07951	284 aa		9.44	□□□□□ -0.9

Retrieved 100 of 20,778 RNA–protein pairs in 300.4 ms