RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 TMEM8AQ9HCN3 771 aa9.02□□□□□ -0.96
PTPN3-204ENST00000446349 FKBP1BP68106 108 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 DRAP1Q14919 205 aaPredicted RBP9.02□□□□□ -0.97
PTPN3-204ENST00000446349 KIF19Q2TAC6 998 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 CAP2P40123 477 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 NCOA4Q13772 614 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 SYTL3Q4VX76 610 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 CAPN12Q6ZSI9 719 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 LINC00523Q86TU6 105 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 ATPAF2Q8N5M1 289 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 NEUROG2Q9H2A3 272 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 THG1LQ9NWX6 298 aaKnown RBP9.02□□□□□ -0.97
PTPN3-204ENST00000446349 L3MBTL1Q9Y468 752 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 FAM200BP0CF97 657 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 DHX9Q08211 1270 aaKnown RBP9.02□□□□□ -0.97
PTPN3-204ENST00000446349 NAA25Q14CX7 972 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 EFCAB12Q6NXP0 572 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 DAGLBQ8NCG7 672 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 ENGASEQ8NFI3 743 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 RIN2Q8WYP3 895 aaPredicted RBP9.02□□□□□ -0.97
PTPN3-204ENST00000446349 STK39Q9UEW8 545 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 ADAMTS1Q9UHI8 967 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 NRBP1Q9UHY1 535 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 EMSYQ7Z589 1322 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 PSMA3P25788 255 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 RPA1P27694 616 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 AXLP30530 894 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 PATL1Q86TB9 770 aaKnown RBP9.02□□□□□ -0.97
PTPN3-204ENST00000446349 GPC2Q8N158 579 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 TRIM55Q9BYV6 548 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 VTA1Q9NP79 307 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 SMARCAL1Q9NZC9 954 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 AGAP1Q9UPQ3 857 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 ITM2BQ9Y287 266 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 HEY1Q9Y5J3 304 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 F9P00740 461 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 URODP06132 367 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 PDK1Q15118 436 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 SMYD4Q8IYR2 804 aaPredicted RBP9.02□□□□□ -0.97
PTPN3-204ENST00000446349 MRPS31Q92665 395 aaKnown RBP9.02□□□□□ -0.97
PTPN3-204ENST00000446349 RMDN1Q96DB5 314 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 CCDC138Q96M89 665 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 MTG1Q9BT17 334 aaPredicted RBP9.02□□□□□ -0.97
PTPN3-204ENST00000446349 HDAC6Q9UBN7 1215 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 APOBEC2Q9Y235 224 aaKnown RBP9.02□□□□□ -0.97
PTPN3-204ENST00000446349 MRFAP1Q9Y605 127 aa9.02□□□□□ -0.97
PTPN3-204ENST00000446349 CTIFO43310 598 aaKnown RBP9.01□□□□□ -0.97
PTPN3-204ENST00000446349 NAMPTP43490 491 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 PRKCEQ02156 737 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 MAP3K10Q02779 954 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 TOB2Q14106 344 aaPredicted RBP9.01□□□□□ -0.97
PTPN3-204ENST00000446349 MORF4L2Q15014 288 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 NFE2Q16621 373 aaPredicted RBP9.01□□□□□ -0.97
PTPN3-204ENST00000446349 RABGAP1LQ5R372 815 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 SLC44A5Q8NCS7 719 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 DHX35Q9H5Z1 703 aaKnown RBP9.01□□□□□ -0.97
PTPN3-204ENST00000446349 TRPC7Q9HCX4 862 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 ABHD10Q9NUJ1 306 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.01□□□□□ -0.97
PTPN3-204ENST00000446349 ZNF609O15014 1411 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 ANP32DO95626 131 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 NME3Q13232 169 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 NT5DC4Q86YG4 428 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 FAM9CQ8IZT9 166 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 EGFL8Q99944 293 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 MROH7Q68CQ1 1323 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 ZC3H11AO75152 810 aaKnown RBP eCLIP9.01□□□□□ -0.97
PTPN3-204ENST00000446349 NPTXRO95502 500 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 SERPINB9P50453 376 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 ANXA11P50995 505 aaKnown RBP9.01□□□□□ -0.97
PTPN3-204ENST00000446349 POLD3Q15054 466 aaPredicted RBP9.01□□□□□ -0.97
PTPN3-204ENST00000446349 SLC7A14Q8TBB6 771 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 TEKT4Q8WW24 435 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 ALKBH8Q96BT7 664 aaKnown RBP9.01□□□□□ -0.97
PTPN3-204ENST00000446349 SENP7Q9BQF6 1050 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 RRN3Q9NYV6 651 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 HSPBP1Q9NZL4 362 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 MAGED2Q9UNF1 606 aaPredicted RBP9.01□□□□□ -0.97
PTPN3-204ENST00000446349 SFI1A8K8P3 1242 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 U2AF2P26368 475 aaKnown RBP eCLIP9.01□□□□□ -0.97
PTPN3-204ENST00000446349 TTLL9Q3SXZ7 439 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 DPF2Q92785 391 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 SPDL1Q96EA4 605 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 SNF8Q96H20 258 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 ACTR5Q9H9F9 607 aaPredicted RBP9.01□□□□□ -0.97
PTPN3-204ENST00000446349 APEX2Q9UBZ4 518 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 FGGP02679 453 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 ADORA2BP29275 332 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 PRCPP42785 496 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 LHX1P48742 406 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 PHKG1Q16816 387 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 ATG9AQ7Z3C6 839 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 GRAMD1AQ96CP6 724 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 PRDM10Q9NQV6 1147 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 PSD3Q9NYI0 1048 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 TMX2Q9Y320 296 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 VWDEQ8N2E2 1590 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 HNRNPRO43390 633 aaKnown RBP9.01□□□□□ -0.97
PTPN3-204ENST00000446349 OR1G1P47890 313 aa9.01□□□□□ -0.97
PTPN3-204ENST00000446349 SULT1E1P49888 294 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms