RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 LDHAP00338 332 aaKnown RBP18.71■□□□□ 0.59
LIME1-202ENST00000444951 GRM5P41594 1212 aa18.71■□□□□ 0.59
LIME1-202ENST00000444951 FKBP3Q00688 224 aaKnown RBP18.71■□□□□ 0.59
LIME1-202ENST00000444951 CT47A1Q5JQC4 288 aaPredicted RBP18.71■□□□□ 0.59
LIME1-202ENST00000444951 C12orf56Q8IXR9 622 aa18.71■□□□□ 0.59
LIME1-202ENST00000444951 ACAP3Q96P50 834 aa18.71■□□□□ 0.59
LIME1-202ENST00000444951 NSUN3Q9H649 340 aaKnown RBP18.71■□□□□ 0.59
LIME1-202ENST00000444951 DMAC2Q9NW81 257 aa18.71■□□□□ 0.59
LIME1-202ENST00000444951 FRMD4BQ9Y2L6 1034 aa18.71■□□□□ 0.59
LIME1-202ENST00000444951 MRPL42Q9Y6G3 142 aaKnown RBP18.71■□□□□ 0.59
LIME1-202ENST00000444951 GRXCR2A6NFK2 248 aa18.7■□□□□ 0.58
LIME1-202ENST00000444951 FAM189A1O60320 539 aa18.7■□□□□ 0.58
LIME1-202ENST00000444951 RECQL4O94761 1208 aa18.7■□□□□ 0.58
LIME1-202ENST00000444951 CLTAP09496 248 aa18.7■□□□□ 0.58
LIME1-202ENST00000444951 CXCL8P10145 99 aa18.7■□□□□ 0.58
LIME1-202ENST00000444951 FGFR1P11362 822 aa18.7■□□□□ 0.58
LIME1-202ENST00000444951 ATF7P17544 494 aaPredicted RBP18.7■□□□□ 0.58
LIME1-202ENST00000444951 YARSP54577 528 aaKnown RBP18.7■□□□□ 0.58
LIME1-202ENST00000444951 MYL5Q02045 173 aa18.7■□□□□ 0.58
LIME1-202ENST00000444951 BTG3Q14201 252 aaPredicted RBP18.7■□□□□ 0.58
LIME1-202ENST00000444951 SNRNP35Q16560 246 aaKnown RBP18.7■□□□□ 0.58
LIME1-202ENST00000444951 SPATA1Q5VX52 437 aa18.7■□□□□ 0.58
LIME1-202ENST00000444951 CRELD2Q6UXH1 353 aaPredicted RBP18.7■□□□□ 0.58
LIME1-202ENST00000444951 SLC9A9Q8IVB4 645 aa18.7■□□□□ 0.58
LIME1-202ENST00000444951 PGBD4Q96DM1 585 aa18.7■□□□□ 0.58
LIME1-202ENST00000444951 PABPC5Q96DU9 382 aaKnown RBP18.7■□□□□ 0.58
LIME1-202ENST00000444951 LRFN3Q9BTN0 628 aa18.7■□□□□ 0.58
LIME1-202ENST00000444951 ANP32EQ9BTT0 268 aa18.7■□□□□ 0.58
LIME1-202ENST00000444951 TRAIPQ9BWF2 469 aa18.7■□□□□ 0.58
LIME1-202ENST00000444951 RPF1Q9H9Y2 349 aaKnown RBP18.7■□□□□ 0.58
LIME1-202ENST00000444951 CBX8Q9HC52 389 aa18.7■□□□□ 0.58
LIME1-202ENST00000444951 RBAKQ9NYW8 714 aaPredicted RBP18.7■□□□□ 0.58
LIME1-202ENST00000444951 CPSF3Q9UKF6 684 aaKnown RBP18.7■□□□□ 0.58
LIME1-202ENST00000444951 INPP5FQ9Y2H2 1132 aa18.7■□□□□ 0.58
LIME1-202ENST00000444951 NFE2L3Q9Y4A8 694 aa18.7■□□□□ 0.58
LIME1-202ENST00000444951 ZNF233A6NK53 670 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 BECN2A8MW95 431 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 KIAA0391O15091 583 aaKnown RBP18.69■□□□□ 0.58
LIME1-202ENST00000444951 ZNF623O75123 536 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 AKAP3O75969 853 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 ADRB2P07550 413 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 GTF2F1P35269 517 aaKnown RBP eCLIP18.69■□□□□ 0.583e-6■□□□□ 10.3
LIME1-202ENST00000444951 LTBRP36941 435 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 FAM189BP81408 668 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 CAMK1Q14012 370 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 ENOX2Q16206 610 aaKnown RBP18.69■□□□□ 0.58
LIME1-202ENST00000444951 NFIL3Q16649 462 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 KYAT1Q16773 422 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 CCDC40Q4G0X9 1142 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 PAN2Q504Q3 1202 aaKnown RBP18.69■□□□□ 0.58
LIME1-202ENST00000444951 AGMOQ6ZNB7 445 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 LRRC55Q6ZSA7 311 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 EP400NLQ6ZTU2 488 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 MRPL10Q7Z7H8 261 aaKnown RBP18.69■□□□□ 0.58
LIME1-202ENST00000444951 FAM186BQ8IYM0 893 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 RNF214Q8ND24 703 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 ENOX1Q8TC92 643 aaKnown RBP18.69■□□□□ 0.58
LIME1-202ENST00000444951 HELQQ8TDG4 1101 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 KIAA1586Q9HCI6 787 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 ALG13Q9NP73 1137 aaKnown RBP18.69■□□□□ 0.58
LIME1-202ENST00000444951 TMEM161AQ9NX61 479 aa18.69■□□□□ 0.58
LIME1-202ENST00000444951 FGFR1OPO95684 399 aaKnown RBP18.68■□□□□ 0.58
LIME1-202ENST00000444951 RB1P06400 928 aa18.68■□□□□ 0.58
LIME1-202ENST00000444951 EPB41P11171 864 aaKnown RBP18.68■□□□□ 0.58
LIME1-202ENST00000444951 DNAJB1P25685 340 aa18.68■□□□□ 0.58
LIME1-202ENST00000444951 PSMC2P35998 433 aaKnown RBP18.68■□□□□ 0.58
LIME1-202ENST00000444951 MLH1P40692 756 aa18.68■□□□□ 0.58
LIME1-202ENST00000444951 SPAG1Q07617 926 aa18.68■□□□□ 0.58
LIME1-202ENST00000444951 DLX2Q07687 328 aaPredicted RBP18.68■□□□□ 0.58
LIME1-202ENST00000444951 HYAL1Q12794 435 aa18.68■□□□□ 0.58
LIME1-202ENST00000444951 MYBPC2Q14324 1141 aa18.68■□□□□ 0.58
LIME1-202ENST00000444951 ZNF598Q86UK7 904 aaKnown RBP18.68■□□□□ 0.58
LIME1-202ENST00000444951 LUZP1Q86V48 1076 aa18.68■□□□□ 0.58
LIME1-202ENST00000444951 NPAS4Q8IUM7 802 aa18.68■□□□□ 0.58
LIME1-202ENST00000444951 DHX40Q8IX18 779 aaKnown RBP18.68■□□□□ 0.58
LIME1-202ENST00000444951 GJD3Q8N144 294 aa18.68■□□□□ 0.58
LIME1-202ENST00000444951 CCDC127Q96BQ5 260 aa18.68■□□□□ 0.58
LIME1-202ENST00000444951 ZFP42Q96MM3 310 aa18.68■□□□□ 0.58
LIME1-202ENST00000444951 CEP63Q96MT8 703 aa18.68■□□□□ 0.58
LIME1-202ENST00000444951 GAD1Q99259 594 aa18.68■□□□□ 0.58
LIME1-202ENST00000444951 C11orf84Q9BUA3 381 aaPredicted RBP18.68■□□□□ 0.58
LIME1-202ENST00000444951 CXCL16Q9H2A7 254 aa18.68■□□□□ 0.58
LIME1-202ENST00000444951 RSAD1Q9HA92 442 aa18.68■□□□□ 0.58
LIME1-202ENST00000444951 SAMSN1Q9NSI8 373 aaKnown RBP18.68■□□□□ 0.58
LIME1-202ENST00000444951 FANCLQ9NW38 375 aa18.68■□□□□ 0.58
LIME1-202ENST00000444951 CLDND1Q9NY35 253 aa18.68■□□□□ 0.58
LIME1-202ENST00000444951 LACTBL1A8MY62 500 aa18.67■□□□□ 0.58
LIME1-202ENST00000444951 EOMESO95936 686 aa18.67■□□□□ 0.58
LIME1-202ENST00000444951 PPP2R3AQ06190 1150 aa18.67■□□□□ 0.58
LIME1-202ENST00000444951 SLC10A6Q3KNW5 377 aa18.67■□□□□ 0.58
LIME1-202ENST00000444951 FAM43BQ6ZT52 329 aaPredicted RBP18.67■□□□□ 0.58
LIME1-202ENST00000444951 ZC3H3Q8IXZ2 948 aaKnown RBP18.67■□□□□ 0.58
LIME1-202ENST00000444951 RPS6KC1Q96S38 1066 aa18.67■□□□□ 0.58
LIME1-202ENST00000444951 BPIFA3Q9BQP9 254 aa18.67■□□□□ 0.58
LIME1-202ENST00000444951 ELAC1Q9H777 363 aaKnown RBP18.67■□□□□ 0.58
LIME1-202ENST00000444951 PDE11AQ9HCR9 933 aa18.67■□□□□ 0.58
LIME1-202ENST00000444951 TOPORSQ9NS56 1045 aaPredicted RBP18.67■□□□□ 0.58
LIME1-202ENST00000444951 PLXNA4Q9HCM2 1894 aa18.67■□□□□ 0.58
LIME1-202ENST00000444951 SMTNL1A8MU46 457 aa18.66■□□□□ 0.58
LIME1-202ENST00000444951 PI4K2BG5E9Z4 385 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms