RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 TSC22D3Q99576 134 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 NT5C3AQ9H0P0 336 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 RPAP3Q9H6T3 665 aaPredicted RBP9.15□□□□□ -0.94
HPS4-206ENST00000439453 KCNK9Q9NPC2 374 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 GCNT4Q9P109 453 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 KLHL14Q9P2G3 628 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 PCYOX1Q9UHG3 505 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 PCDHA3Q9Y5H8 950 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 MARCH6O60337 910 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 UNC5CO95185 931 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 NDUFB10O96000 172 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 KRT18P05783 430 aaKnown RBP9.15□□□□□ -0.94
HPS4-206ENST00000439453 MGAT5Q09328 741 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 HYIQ5T013 277 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 TTC27Q6P3X3 843 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 CCDC25Q86WR0 208 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 LMNTD2Q8IXW0 634 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 LRRC47Q8N1G4 583 aaKnown RBP9.15□□□□□ -0.94
HPS4-206ENST00000439453 HAS1Q92839 578 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 ARHGEF26Q96DR7 871 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 RNPEPL1Q9HAU8 725 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 RBPJLQ9UBG7 517 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 PFASO15067 1338 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 KDM3AQ9Y4C1 1321 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 TTLL1O95922 423 aa9.15□□□□□ -0.95
HPS4-206ENST00000439453 CYP11B2P19099 503 aa9.15□□□□□ -0.95
HPS4-206ENST00000439453 CALB2P22676 271 aa9.15□□□□□ -0.95
HPS4-206ENST00000439453 PCK1P35558 622 aa9.15□□□□□ -0.95
HPS4-206ENST00000439453 PAPOLAP51003 745 aaKnown RBP9.15□□□□□ -0.95
HPS4-206ENST00000439453 CASP5P51878 434 aa9.15□□□□□ -0.95
HPS4-206ENST00000439453 GNPTABQ3T906 1256 aa9.15□□□□□ -0.95
HPS4-206ENST00000439453 CWF19L1Q69YN2 538 aaKnown RBP9.15□□□□□ -0.95
HPS4-206ENST00000439453 ANKLE1Q8NAG6 615 aa9.15□□□□□ -0.95
HPS4-206ENST00000439453 SLC17A8Q8NDX2 589 aa9.15□□□□□ -0.95
HPS4-206ENST00000439453 ART4Q93070 314 aa9.15□□□□□ -0.95
HPS4-206ENST00000439453 COA7Q96BR5 231 aa9.15□□□□□ -0.95
HPS4-206ENST00000439453 PARK7Q99497 189 aaKnown RBP9.15□□□□□ -0.95
HPS4-206ENST00000439453 UBA5Q9GZZ9 404 aa9.15□□□□□ -0.95
HPS4-206ENST00000439453 ZFYVE28Q9HCC9 887 aa9.15□□□□□ -0.95
HPS4-206ENST00000439453 MORF4L1Q9UBU8 362 aa9.15□□□□□ -0.95
HPS4-206ENST00000439453 TRAF3IP3Q9Y228 551 aa9.15□□□□□ -0.95
HPS4-206ENST00000439453 LRRD1A4D1F6 860 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 SMIM24O75264 130 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 SNHG28P0DPA3 235 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 GNAT1P11488 350 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 ALAS1P13196 640 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 SMARCA1P28370 1054 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 RAD23BP54727 409 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 MXRA7P84157 204 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 CCDC15Q0P6D6 951 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 CGB2Q6NT52 195 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 ECHDC2Q86YB7 292 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 MFN1Q8IWA4 741 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 CD99L2Q8TCZ2 262 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 SERPINB12Q96P63 405 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 TGS1Q96RS0 853 aaKnown RBP9.14□□□□□ -0.95
HPS4-206ENST00000439453 DDX23Q9BUQ8 820 aaKnown RBP9.14□□□□□ -0.95
HPS4-206ENST00000439453 PAPOLBQ9NRJ5 636 aaKnown RBP9.14□□□□□ -0.95
HPS4-206ENST00000439453 TXLNGQ9NUQ3 528 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 FBXO28Q9NVF7 368 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 BTBD7Q9P203 1132 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 DDX25Q9UHL0 483 aaKnown RBP9.14□□□□□ -0.95
HPS4-206ENST00000439453 SYNGAP1Q96PV0 1343 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 FAM170AA1A519 330 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 ANKRD63C9JTQ0 380 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 E7ENQ6 273 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 PEX11AO75192 247 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 AKAP3O75969 853 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 CTNNA2P26232 953 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 SOX5P35711 763 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 MRPS35P82673 323 aaKnown RBP9.14□□□□□ -0.95
HPS4-206ENST00000439453 KNOP1Q1ED39 458 aaKnown RBP9.14□□□□□ -0.95
HPS4-206ENST00000439453 PARP6Q2NL67 630 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 Q3C1V9 767 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 CCDC137Q6PK04 289 aaKnown RBP9.14□□□□□ -0.95
HPS4-206ENST00000439453 TRMT10CQ7L0Y3 403 aaKnown RBP9.14□□□□□ -0.95
HPS4-206ENST00000439453 LPAR1Q92633 364 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 ZMYND8Q9ULU4 1186 aaPredicted RBP9.14□□□□□ -0.95
HPS4-206ENST00000439453 PCDHA12Q9UN75 941 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 F5H6K3 240 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 ABLIM1O14639 778 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 ATP6V1C1P21283 382 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 ATP5DP30049 168 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 SNX1Q13596 522 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 ZDHHC14Q8IZN3 488 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 PIGOQ8TEQ8 1089 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 BEGAINQ9BUH8 593 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 ZNF287Q9HBT7 754 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 COG5Q9UP83 839 aa9.14□□□□□ -0.95
HPS4-206ENST00000439453 POTEB3A0JP26 581 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 hCG_1984214I3L0E3 225 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 WDR46O15213 610 aaKnown RBP9.13□□□□□ -0.95
HPS4-206ENST00000439453 CALUO43852 315 aaPredicted RBP9.13□□□□□ -0.95
HPS4-206ENST00000439453 NPTXRO95502 500 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 GH1P01241 217 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 HOXD13P35453 343 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 TRAF1Q13077 416 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 ACVR2BQ13705 512 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 MPP2Q14168 576 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 CMPK2Q5EBM0 449 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms