RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 CLEC4DQ8WXI8 215 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 DDX1Q92499 740 aaKnown RBP17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 SGSM3Q96HU1 749 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 TMEM8AQ9HCN3 771 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 GPRC5CQ9NQ84 441 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 WHRNQ9P202 907 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 SNCAIPQ9Y6H5 919 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 PARP14Q460N5 1801 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 IQCA1LA6NCM1 817 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 NFIBO00712 420 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 TP73O15350 636 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 SLCO1A2P46721 670 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 UGCGQ16739 394 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 PCNX4Q63HM2 1172 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 ACAD10Q6JQN1 1059 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 C4orf19Q8IY42 314 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 ANKS4BQ8N8V4 417 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 PARD3BQ8TEW8 1205 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 CDCA5Q96FF9 252 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 NT5C1BQ96P26 610 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 PRMT1Q99873 361 aaKnown RBP17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 CD248Q9HCU0 757 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 EXOC7Q9UPT5 735 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 AFG3L2Q9Y4W6 797 aa17.53■□□□□ 0.4
CLCNKA-203ENST00000439316 TMEM150BA6NC51 233 aa17.52■□□□□ 0.4
CLCNKA-203ENST00000439316 GSTA1P08263 222 aa17.52■□□□□ 0.4
CLCNKA-203ENST00000439316 MRPS9P82933 396 aaKnown RBP17.52■□□□□ 0.4
CLCNKA-203ENST00000439316 CALCOCO2Q13137 446 aa17.52■□□□□ 0.4
CLCNKA-203ENST00000439316 PPP1R7Q15435 360 aa17.52■□□□□ 0.4
CLCNKA-203ENST00000439316 CNGA2Q16280 664 aa17.52■□□□□ 0.4
CLCNKA-203ENST00000439316 RHBDF2Q6PJF5 856 aa17.52■□□□□ 0.4
CLCNKA-203ENST00000439316 NSMFQ6X4W1 530 aa17.52■□□□□ 0.4
CLCNKA-203ENST00000439316 TAOK1Q7L7X3 1001 aa17.52■□□□□ 0.4
CLCNKA-203ENST00000439316 MAP4K3Q8IVH8 894 aa17.52■□□□□ 0.4
CLCNKA-203ENST00000439316 PARP9Q8IXQ6 854 aa17.52■□□□□ 0.4
CLCNKA-203ENST00000439316 CDC42EP4Q9H3Q1 356 aaKnown RBP17.52■□□□□ 0.4
CLCNKA-203ENST00000439316 AAASQ9NRG9 546 aa17.52■□□□□ 0.4
CLCNKA-203ENST00000439316 PAPPA2Q9BXP8 1791 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 C19orf81C9J6K1 198 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 CLDN3O15551 220 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 DLATP10515 647 aaKnown RBP17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 KRT17Q04695 432 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 CLEC16AQ2KHT3 1053 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 CPXCR1Q8N123 301 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 TMEM161BQ8NDZ6 487 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 TMC2Q8TDI7 906 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 SAAL1Q96ER3 474 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 NCAPGQ9BPX3 1015 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 SH2D3AQ9BRG2 576 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 PLVAPQ9BX97 442 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 TBC1D22BQ9NU19 505 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 TBX20Q9UMR3 447 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 SLC12A4Q9UP95 1085 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 CSADQ9Y600 493 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 GSCP56915 257 aaPredicted RBP17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 MTMR1Q13613 665 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 SNCBQ16143 134 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 SGO2Q562F6 1265 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 EXOC3L1Q86VI1 746 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 CCDC50Q8IVM0 306 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 CNKSR2Q8WXI2 1034 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 KIFAP3Q92845 792 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 CCDC127Q96BQ5 260 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 C12orf42Q96LP6 360 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 POP1Q99575 1024 aaKnown RBP17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 NSRP1Q9H0G5 558 aaKnown RBP17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 SLC38A10Q9HBR0 1119 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 SAMD15Q9P1V8 674 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 PTPRFP10586 1907 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 RLFQ13129 1914 aa17.51■□□□□ 0.39
CLCNKA-203ENST00000439316 ATP2C2O75185 946 aa17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 GTF2H1P32780 548 aa17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 NF2P35240 595 aa17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 IREB2P48200 963 aaKnown RBP17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 FAM102BQ5T8I3 360 aa17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 SYDE1Q6ZW31 735 aaPredicted RBP17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 MOB2Q70IA6 237 aa17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 CCDC25Q86WR0 208 aa17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 MCF2L2Q86YR7 1114 aa17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 FBXL13Q8NEE6 735 aa17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 TAS1R2Q8TE23 839 aa17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 MFSD14AQ96MC6 490 aa17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 FBXL18Q96ME1 805 aa17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 DDX23Q9BUQ8 820 aaKnown RBP17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 TOPORSQ9NS56 1045 aaPredicted RBP17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 ANKEF1Q9NU02 776 aa17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 RAB20Q9NX57 234 aa17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 WDR90Q96KV7 1748 aa17.5■□□□□ 0.39
CLCNKA-203ENST00000439316 ITIH2P19823 946 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 PSMC5P62195 406 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 PTK6Q13882 451 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 PNMA8AQ86V59 439 aaPredicted RBP17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 MAGEC3Q8TD91 643 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 SYTL5Q8TDW5 730 aaPredicted RBP17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 C1orf54Q8WWF1 131 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 DHX38Q92620 1227 aaKnown RBP17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 WNK4Q96J92 1243 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 SERPINB12Q96P63 405 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms