RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 MOCS2O96007 188 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-205ENST00000439160 PTPRAP18433 802 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 GTF2A2P52657 109 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 PSMD6Q15008 389 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 C1orf228Q6PIY5 440 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 TNIP3Q96KP6 325 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 PACSIN1Q9BY11 444 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 VPS33BQ9H267 617 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 MLXIPLQ9NP71 852 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 A1CFQ9NQ94 594 aaKnown RBP13.04□□□□□ -0.32
TCOF1-205ENST00000439160 GSTA1P08263 222 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 GSTA2P09210 222 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 FGRP09769 529 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 GUCY2CP25092 1073 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 RASSF2P50749 326 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 MAGOHP61326 146 aaKnown RBP13.03□□□□□ -0.32
TCOF1-205ENST00000439160 LY6KQ17RY6 165 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 GLRA4Q5JXX5 417 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 GPAT2Q6NUI2 795 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 SRRM1Q8IYB3 904 aaKnown RBP13.03□□□□□ -0.32
TCOF1-205ENST00000439160 TAS1R2Q8TE23 839 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 NCAPGQ9BPX3 1015 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 POLIQ9UNA4 740 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.03□□□□□ -0.32
TCOF1-205ENST00000439160 FAM187AA6NFU0 413 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 CTIFO43310 598 aaKnown RBP13.03□□□□□ -0.32
TCOF1-205ENST00000439160 BNIP3LO60238 219 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 DGKZQ13574 1117 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 SMAD1Q15797 465 aaKnown RBP13.03□□□□□ -0.32
TCOF1-205ENST00000439160 IL17AQ16552 155 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 FIGNQ5HY92 759 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 MROH8Q9H579 483 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 PRKAG2Q9UGJ0 569 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 PPP2R3BQ9Y5P8 575 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 KRT17Q04695 432 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 NAA25Q14CX7 972 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 ARHGAP24Q8N264 748 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 PURBQ96QR8 312 aaKnown RBP13.03□□□□□ -0.32
TCOF1-205ENST00000439160 CNOT10Q9H9A5 744 aaKnown RBP13.03□□□□□ -0.32
TCOF1-205ENST00000439160 GBA2Q9HCG7 927 aaPredicted RBP13.03□□□□□ -0.32
TCOF1-205ENST00000439160 CLTAP09496 248 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 BRD2P25440 801 aaKnown RBP13.03□□□□□ -0.32
TCOF1-205ENST00000439160 KCNA1Q09470 495 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 RPS6KA2Q15349 733 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 SLC51AQ86UW1 340 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 SLC5A5Q92911 643 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 MTMR12Q9C0I1 747 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 KIF13AQ9H1H9 1805 aa13.03□□□□□ -0.32
TCOF1-205ENST00000439160 NALCNQ8IZF0 1738 aa13.02□□□□□ -0.32
TCOF1-205ENST00000439160 OGTO15294 1046 aa13.02□□□□□ -0.32
TCOF1-205ENST00000439160 ITGB3P05106 788 aa13.02□□□□□ -0.32
TCOF1-205ENST00000439160 SLC1A1P43005 524 aa13.02□□□□□ -0.32
TCOF1-205ENST00000439160 NAMPTP43490 491 aa13.02□□□□□ -0.32
TCOF1-205ENST00000439160 KCNJ1P48048 391 aa13.02□□□□□ -0.32
TCOF1-205ENST00000439160 KIZQ2M2Z5 673 aa13.02□□□□□ -0.32
TCOF1-205ENST00000439160 IZUMO3Q5VZ72 239 aa13.02□□□□□ -0.32
TCOF1-205ENST00000439160 NUGGCQ68CJ6 796 aa13.02□□□□□ -0.32
TCOF1-205ENST00000439160 SAMD3Q8N6K7 520 aa13.02□□□□□ -0.32
TCOF1-205ENST00000439160 SENP7Q9BQF6 1050 aa13.02□□□□□ -0.32
TCOF1-205ENST00000439160 IPO11Q9UI26 975 aaKnown RBP13.02□□□□□ -0.32
TCOF1-205ENST00000439160 CPA4Q9UI42 421 aa13.02□□□□□ -0.32
TCOF1-205ENST00000439160 RASA4BC9J798 803 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 MYO1CO00159 1063 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 RASA4O43374 803 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 GMNNO75496 209 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 RPS6KA5O75582 802 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 SGPL1O95470 568 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 SYCP2LQ5T4T6 812 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 APPL2Q8NEU8 664 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 UBA3Q8TBC4 463 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 AFG1LQ8WV93 481 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 TARSL2A2RTX5 802 aaKnown RBP13.02□□□□□ -0.33
TCOF1-205ENST00000439160 NPTXRO95502 500 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 VTNP04004 478 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 ARSEP51690 589 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 CDC42EP1Q00587 391 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 ORC1Q13415 861 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 METTL7BQ6UX53 244 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 DDX42Q86XP3 938 aaKnown RBP eCLIP13.02□□□□□ -0.33
TCOF1-205ENST00000439160 MICAL1Q8TDZ2 1067 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 SKA2Q8WVK7 121 aaPredicted RBP13.02□□□□□ -0.33
TCOF1-205ENST00000439160 ELMO3Q96BJ8 720 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 HPDLQ96IR7 371 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 KATNAL1Q9BW62 490 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 RANBP17Q9H2T7 1088 aaKnown RBP13.02□□□□□ -0.33
TCOF1-205ENST00000439160 KLK14Q9P0G3 267 aa13.02□□□□□ -0.33
TCOF1-205ENST00000439160 FAM237AA0A1B0GTK4 181 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 ARHGAP42A6NI28 874 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 SH3BP5O60239 455 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 CYP2C8P10632 490 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 DHX34Q14147 1143 aaKnown RBP13.01□□□□□ -0.33
TCOF1-205ENST00000439160 HEATR6Q6AI08 1181 aaKnown RBP13.01□□□□□ -0.33
TCOF1-205ENST00000439160 SV2AQ7L0J3 742 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 ZBED8Q8IZ13 594 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 THOC1Q96FV9 657 aaKnown RBP13.01□□□□□ -0.33
TCOF1-205ENST00000439160 ZBED2Q9BTP6 218 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 NT5C1AQ9BXI3 368 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 DDX56Q9NY93 547 aaKnown RBP13.01□□□□□ -0.33
TCOF1-205ENST00000439160 TLK1Q9UKI8 766 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 TOM1L1O75674 476 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms