RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 EXOC7Q9UPT5 735 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 ZDHHC9Q9Y397 364 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 FRMD3A2A2Y4 597 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 SPDYE4A6NLX3 237 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 TMEM189-UBE2V1I3L0A0 370 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 OGTO15294 1046 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 POLR2DO15514 142 aaKnown RBP16.57■□□□□ 0.24
LIMS3-201ENST00000437679 B3GAT3O94766 335 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 GCNT3O95395 438 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 CXCL8P10145 99 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 CLCN4P51793 760 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 CLCNKBP51801 687 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 ZP2Q05996 745 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 ALCAMQ13740 583 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 UPP1Q16831 310 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 SLC10A6Q3KNW5 377 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 FAM171A1Q5VUB5 890 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 RESP18Q5W5W9 173 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 SLFN12LQ6IEE8 588 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 CES5AQ6NT32 575 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 ELMSAN1Q6PJG2 1045 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 B3GALT6Q96L58 329 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 SPATA32Q96LK8 384 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 ZMAT2Q96NC0 199 aaKnown RBP16.57■□□□□ 0.24
LIMS3-201ENST00000437679 PYM1Q9BRP8 204 aaKnown RBP16.57■□□□□ 0.24
LIMS3-201ENST00000437679 S1PR5Q9H228 398 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 MAGEF1Q9HAY2 307 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 GOLGA2P5Q9HBQ8 144 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 OLFML3Q9NRN5 406 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 KBTBD4Q9NVX7 518 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 PCDHB13Q9Y5F0 798 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 MUC3AQ02505 3323 aa16.57■□□□□ 0.24
LIMS3-201ENST00000437679 A0A0B4J269 797 aa16.56■□□□□ 0.24
LIMS3-201ENST00000437679 TEX28O15482 410 aa16.56■□□□□ 0.24
LIMS3-201ENST00000437679 TRAPPC3O43617 180 aa16.56■□□□□ 0.24
LIMS3-201ENST00000437679 PPP1R37O75864 691 aa16.56■□□□□ 0.24
LIMS3-201ENST00000437679 RPL9P32969 192 aaKnown RBP16.56■□□□□ 0.24
LIMS3-201ENST00000437679 ITIH3Q06033 890 aa16.56■□□□□ 0.24
LIMS3-201ENST00000437679 PPP2R3AQ06190 1150 aa16.56■□□□□ 0.24
LIMS3-201ENST00000437679 SOX4Q06945 474 aaPredicted RBP16.56■□□□□ 0.24
LIMS3-201ENST00000437679 SLC39A4Q6P5W5 647 aa16.56■□□□□ 0.24
LIMS3-201ENST00000437679 CEP57Q86XR8 500 aa16.56■□□□□ 0.24
LIMS3-201ENST00000437679 SUSD6Q92537 303 aa16.56■□□□□ 0.24
LIMS3-201ENST00000437679 FBXL18Q96ME1 805 aa16.56■□□□□ 0.24
LIMS3-201ENST00000437679 ACCSQ96QU6 501 aa16.56■□□□□ 0.24
LIMS3-201ENST00000437679 TTPALQ9BTX7 342 aa16.56■□□□□ 0.24
LIMS3-201ENST00000437679 RPF1Q9H9Y2 349 aaKnown RBP16.56■□□□□ 0.24
LIMS3-201ENST00000437679 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.56■□□□□ 0.24
LIMS3-201ENST00000437679 PDCD11Q14690 1871 aaKnown RBP16.55■□□□□ 0.24
LIMS3-201ENST00000437679 ANKRD63C9JTQ0 380 aa16.55■□□□□ 0.24
LIMS3-201ENST00000437679 PODXLO00592 558 aa16.55■□□□□ 0.24
LIMS3-201ENST00000437679 MEFVO15553 781 aaPredicted RBP16.55■□□□□ 0.24
LIMS3-201ENST00000437679 GLUD1P00367 558 aa16.55■□□□□ 0.24
LIMS3-201ENST00000437679 TNFSF9P41273 254 aa16.55■□□□□ 0.24
LIMS3-201ENST00000437679 CBX2Q14781 532 aaPredicted RBP16.55■□□□□ 0.24
LIMS3-201ENST00000437679 POSTNQ15063 836 aa16.55■□□□□ 0.24
LIMS3-201ENST00000437679 RTP2Q5QGT7 225 aa16.55■□□□□ 0.24
LIMS3-201ENST00000437679 RARS2Q5T160 578 aaKnown RBP16.55■□□□□ 0.24
LIMS3-201ENST00000437679 L1TD1Q5T7N2 865 aaKnown RBP16.55■□□□□ 0.24
LIMS3-201ENST00000437679 ADALQ6DHV7 355 aa16.55■□□□□ 0.24
LIMS3-201ENST00000437679 PDXDC1Q6P996 788 aa16.55■□□□□ 0.24
LIMS3-201ENST00000437679 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.55■□□□□ 0.24
LIMS3-201ENST00000437679 LEO1Q8WVC0 666 aaPredicted RBP16.55■□□□□ 0.24
LIMS3-201ENST00000437679 C18orf25Q96B23 403 aaPredicted RBP16.55■□□□□ 0.24
LIMS3-201ENST00000437679 STRA6Q9BX79 667 aa16.55■□□□□ 0.24
LIMS3-201ENST00000437679 TRIM9Q9C026 710 aa16.55■□□□□ 0.24
LIMS3-201ENST00000437679 ADAM7Q9H2U9 754 aa16.55■□□□□ 0.24
LIMS3-201ENST00000437679 CD320Q9NPF0 282 aa16.55■□□□□ 0.24
LIMS3-201ENST00000437679 FNIP2Q9P278 1114 aa16.55■□□□□ 0.24
LIMS3-201ENST00000437679 DPP7Q9UHL4 492 aa16.55■□□□□ 0.24
LIMS3-201ENST00000437679 KCNH3Q9ULD8 1083 aa16.55■□□□□ 0.24
LIMS3-201ENST00000437679 TTC26A0AVF1 554 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 C19orf67A6NJJ6 358 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 XPOTO43592 962 aaKnown RBP16.54■□□□□ 0.24
LIMS3-201ENST00000437679 FAM189A1O60320 539 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 MYBP10242 640 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 ASIC1P78348 528 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 ENOX2Q16206 610 aaKnown RBP16.54■□□□□ 0.24
LIMS3-201ENST00000437679 ZBTB41Q5SVQ8 909 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 PRSS55Q6UWB4 352 aaPredicted RBP16.54■□□□□ 0.24
LIMS3-201ENST00000437679 STXBP4Q6ZWJ1 553 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 CD302Q8IX05 232 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 CEP57L1Q8IYX8 460 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 SYCP3Q8IZU3 236 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 C12orf76Q8N812 135 aaPredicted RBP16.54■□□□□ 0.24
LIMS3-201ENST00000437679 PIK3R5Q8WYR1 880 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 POMGNT1Q8WZA1 660 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 FAM212AQ96EL1 285 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 KIF12Q96FN5 646 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 RIPOR3Q96MK2 946 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 NECTIN4Q96NY8 510 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 TSPAN18Q96SJ8 248 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 C7orf25Q9BPX7 421 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 PHF7Q9BWX1 381 aaPredicted RBP16.54■□□□□ 0.24
LIMS3-201ENST00000437679 SCAND2PQ9GZW5 306 aaPredicted RBP16.54■□□□□ 0.24
LIMS3-201ENST00000437679 SFXN1Q9H9B4 322 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 AGO2Q9UKV8 859 aaKnown RBP16.54■□□□□ 0.24
LIMS3-201ENST00000437679 NUB1Q9Y5A7 615 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 STYXL1Q9Y6J8 313 aa16.54■□□□□ 0.24
LIMS3-201ENST00000437679 TCHHQ07283 1943 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms