RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 DNAJC17Q9NVM6 304 aaKnown RBP12.62□□□□□ -0.39
CD44-209ENST00000433892 ZNRF3Q9ULT6 936 aa12.62□□□□□ -0.39
CD44-209ENST00000433892 MROH7Q68CQ1 1323 aa12.61□□□□□ -0.39
CD44-209ENST00000433892 ZBED4O75132 1171 aa12.61□□□□□ -0.39
CD44-209ENST00000433892 CHKAP35790 457 aa12.61□□□□□ -0.39
CD44-209ENST00000433892 GCNT1Q02742 428 aa12.61□□□□□ -0.39
CD44-209ENST00000433892 SWSAP1Q6NVH7 229 aa12.61□□□□□ -0.39
CD44-209ENST00000433892 LRRC34Q8IZ02 419 aa12.61□□□□□ -0.39
CD44-209ENST00000433892 AGBL3Q8NEM8 1001 aa12.61□□□□□ -0.39
CD44-209ENST00000433892 CCT6BQ92526 530 aa12.61□□□□□ -0.39
CD44-209ENST00000433892 SLC40A1Q9NP59 571 aa12.61□□□□□ -0.39
CD44-209ENST00000433892 C1orf112Q9NSG2 853 aa12.61□□□□□ -0.39
CD44-209ENST00000433892 RASSF9O75901 435 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 NR3C2P08235 984 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 SCTRP47872 440 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 CXCL9Q07325 125 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 TNFAIP8L3Q5GJ75 292 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 TAS1R3Q7RTX0 852 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 CROCCP2Q86T23 111 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 VSIG10LQ86VR7 867 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 CCDC197Q8NCU1 140 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 ATG4CQ96DT6 458 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 ZBED3Q96IU2 234 aaPredicted RBP12.6□□□□□ -0.39
CD44-209ENST00000433892 HEMGNQ9BXL5 484 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 MYOZ2Q9NPC6 264 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 KLC4Q9NSK0 619 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 WHRNQ9P202 907 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 SEPT9Q9UHD8 586 aaPredicted RBP12.6□□□□□ -0.39
CD44-209ENST00000433892 MYPNQ86TC9 1320 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 O00370 1275 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 VWA5AO00534 786 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 STBD1O95210 358 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 EGFRP00533 1210 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 VIMP08670 466 aaKnown RBP12.6□□□□□ -0.39
CD44-209ENST00000433892 SSTR3P32745 418 aaPredicted RBP12.6□□□□□ -0.39
CD44-209ENST00000433892 VPS41P49754 854 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 WNT7BP56706 349 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 ZNF568Q3ZCX4 644 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 BRDTQ58F21 947 aaPredicted RBP12.6□□□□□ -0.39
CD44-209ENST00000433892 SPOPLQ6IQ16 392 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 TRMT10CQ7L0Y3 403 aaKnown RBP12.6□□□□□ -0.39
CD44-209ENST00000433892 EXOC3L1Q86VI1 746 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 NIM1KQ8IY84 436 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 SAMD3Q8N6K7 520 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 SLCO2A1Q92959 643 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 ATP6V0A1Q93050 837 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 FAM118BQ9BPY3 351 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 PDGFDQ9GZP0 370 aaPredicted RBP12.6□□□□□ -0.39
CD44-209ENST00000433892 STMN4Q9H169 189 aaPredicted RBP12.6□□□□□ -0.39
CD44-209ENST00000433892 C17orf75Q9HAS0 396 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 XPNPEP1Q9NQW7 623 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 RNF146Q9NTX7 359 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 R3HDM2Q9Y2K5 976 aaKnown RBP12.6□□□□□ -0.39
CD44-209ENST00000433892 PCDHB2Q9Y5E7 798 aa12.6□□□□□ -0.39
CD44-209ENST00000433892 CFHP08603 1231 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 TNNI1P19237 187 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 ITIH2P19823 946 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 CCND2P30279 289 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 NSFP46459 744 aaKnown RBP12.59□□□□□ -0.39
CD44-209ENST00000433892 LRRC14Q15048 493 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 CNGA2Q16280 664 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 MFSD5Q6N075 450 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 ENOSF1Q7L5Y1 443 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 TAOK1Q7L7X3 1001 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 PASD1Q8IV76 773 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 CCDC50Q8IVM0 306 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 MGARPQ8TDB4 240 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 TEPSINQ96N21 525 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 PWWP2AQ96N64 755 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 CEP89Q96ST8 783 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 ELAC2Q9BQ52 826 aaKnown RBP12.59□□□□□ -0.39
CD44-209ENST00000433892 HAUS2Q9NVX0 235 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 FOXO6A8MYZ6 492 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 ASAP2O43150 1006 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 DGAT1O75907 488 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 RGS20O76081 388 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 CREB1P16220 341 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 KCNA2P16389 499 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 GARTP22102 1010 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 IVDP26440 423 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 ACOT2P49753 483 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 ITGA8P53708 1063 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 LACTB2Q53H82 288 aaPredicted RBP12.59□□□□□ -0.39
CD44-209ENST00000433892 RHBDF2Q6PJF5 856 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 C15orf39Q6ZRI6 1047 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 PIGWQ7Z7B1 504 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 CCDC60Q8IWA6 550 aaPredicted RBP12.59□□□□□ -0.39
CD44-209ENST00000433892 ANKS4BQ8N8V4 417 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 RDM1Q8NG50 284 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 IPO4Q8TEX9 1081 aaKnown RBP12.59□□□□□ -0.39
CD44-209ENST00000433892 DDX27Q96GQ7 796 aaKnown RBP12.59□□□□□ -0.39
CD44-209ENST00000433892 SNF8Q96H20 258 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 FNBP1Q96RU3 617 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 ROPN1BQ9BZX4 212 aaPredicted RBP12.59□□□□□ -0.39
CD44-209ENST00000433892 DCLK3Q9C098 648 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 ROPN1Q9HAT0 212 aaPredicted RBP12.59□□□□□ -0.39
CD44-209ENST00000433892 AVENQ9NQS1 362 aaPredicted RBP12.59□□□□□ -0.39
CD44-209ENST00000433892 PDLIM7Q9NR12 457 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 CYP26B1Q9NR63 512 aa12.59□□□□□ -0.39
CD44-209ENST00000433892 CTNNAL1Q9UBT7 734 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms