RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 KMT5AQ9NQR1 393 aa13.28□□□□□ -0.28
CDH3-202ENST00000429102 DDX60LQ5H9U9 1706 aaKnown RBP13.28□□□□□ -0.28
CDH3-202ENST00000429102 MSH2P43246 934 aa13.28□□□□□ -0.28
CDH3-202ENST00000429102 TAS2R40P59535 323 aa13.28□□□□□ -0.28
CDH3-202ENST00000429102 GPS1Q13098 491 aa13.28□□□□□ -0.28
CDH3-202ENST00000429102 ORC1Q13415 861 aa13.28□□□□□ -0.28
CDH3-202ENST00000429102 TAF11Q15544 211 aa13.28□□□□□ -0.28
CDH3-202ENST00000429102 NBPF20Q3BBV1 942 aa13.28□□□□□ -0.28
CDH3-202ENST00000429102 MDH1BQ5I0G3 518 aa13.28□□□□□ -0.28
CDH3-202ENST00000429102 C1orf220Q5T0J3 134 aa13.28□□□□□ -0.28
CDH3-202ENST00000429102 SEPT12Q8IYM1 358 aa13.28□□□□□ -0.28
CDH3-202ENST00000429102 ART4Q93070 314 aa13.28□□□□□ -0.28
CDH3-202ENST00000429102 TCHPQ9BT92 498 aa13.28□□□□□ -0.28
CDH3-202ENST00000429102 RAB20Q9NX57 234 aa13.28□□□□□ -0.28
CDH3-202ENST00000429102 NENFQ9UMX5 172 aa13.28□□□□□ -0.28
CDH3-202ENST00000429102 PCDHB4Q9Y5E5 795 aa13.28□□□□□ -0.28
CDH3-202ENST00000429102 CCDC88AQ3V6T2 1871 aa13.28□□□□□ -0.28
CDH3-202ENST00000429102 A0A0G2JND7 137 aa13.27□□□□□ -0.28
CDH3-202ENST00000429102 C2orf71A6NGG8 1288 aa13.27□□□□□ -0.28
CDH3-202ENST00000429102 ASAP2O43150 1006 aa13.27□□□□□ -0.28
CDH3-202ENST00000429102 TTC4O95801 387 aa13.27□□□□□ -0.28
CDH3-202ENST00000429102 PLS3P13797 630 aa13.27□□□□□ -0.28
CDH3-202ENST00000429102 OSTNP61366 133 aa13.27□□□□□ -0.28
CDH3-202ENST00000429102 MTMR1Q13613 665 aa13.27□□□□□ -0.28
CDH3-202ENST00000429102 PKN2Q16513 984 aaKnown RBP13.27□□□□□ -0.28
CDH3-202ENST00000429102 PPP2R5EQ16537 467 aa13.27□□□□□ -0.28
CDH3-202ENST00000429102 KCNT1Q5JUK3 1230 aa13.27□□□□□ -0.28
CDH3-202ENST00000429102 CERKQ8TCT0 537 aa13.27□□□□□ -0.28
CDH3-202ENST00000429102 DTX3LQ8TDB6 740 aa13.27□□□□□ -0.28
CDH3-202ENST00000429102 CRYGNQ8WXF5 182 aa13.27□□□□□ -0.28
CDH3-202ENST00000429102 SNF8Q96H20 258 aa13.27□□□□□ -0.28
CDH3-202ENST00000429102 RUNDC3BQ96NL0 473 aa13.27□□□□□ -0.28
CDH3-202ENST00000429102 TAAR1Q96RJ0 339 aa13.27□□□□□ -0.28
CDH3-202ENST00000429102 NPHS2Q9NP85 383 aa13.27□□□□□ -0.28
CDH3-202ENST00000429102 NHSL1Q5SYE7 1610 aa13.27□□□□□ -0.28
CDH3-202ENST00000429102 A0A1W2PPM1 405 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 DNAJC8O75937 253 aaPredicted RBP13.27□□□□□ -0.29
CDH3-202ENST00000429102 PAEPP09466 180 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 GAD2Q05329 585 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 HHATQ5VTY9 493 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 KRT39Q6A163 491 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 HHIPL2Q6UWX4 724 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 CDR2LQ86X02 465 aaPredicted RBP13.27□□□□□ -0.29
CDH3-202ENST00000429102 SEC14L1Q92503 715 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 KIFAP3Q92845 792 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 ZBTB45Q96K62 511 aaPredicted RBP13.27□□□□□ -0.29
CDH3-202ENST00000429102 MBOAT7Q96N66 472 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 PLVAPQ9BX97 442 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 ZNF341Q9BYN7 854 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 DMAC2Q9NW81 257 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 ZMYND8Q9ULU4 1186 aaPredicted RBP13.27□□□□□ -0.29
CDH3-202ENST00000429102 PCDHA3Q9Y5H8 950 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 SGK1O00141 431 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 LGR5O75473 907 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 ADSSP30520 456 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 CPA2P48052 419 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 SPP2Q13103 211 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 SETDB1Q15047 1291 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 ANKS1BQ7Z6G8 1248 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 CCDC77Q9BR77 488 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 PAGR1Q9BTK6 254 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 MKNK1Q9BUB5 465 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 ADAM22Q9P0K1 906 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 PCYOX1Q9UHG3 505 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 ARL2BPQ9Y2Y0 163 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 MRPL11Q9Y3B7 192 aaKnown RBP13.27□□□□□ -0.29
CDH3-202ENST00000429102 SCN7AQ01118 1682 aa13.27□□□□□ -0.29
CDH3-202ENST00000429102 F5H423 210 aaPredicted RBP13.26□□□□□ -0.29
CDH3-202ENST00000429102 C21orf2O43822 256 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 QARSP47897 775 aaKnown RBP13.26□□□□□ -0.29
CDH3-202ENST00000429102 EFTUD2Q15029 972 aaKnown RBP eCLIP13.26□□□□□ -0.29
CDH3-202ENST00000429102 MTERF2Q49AM1 385 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 LACTB2Q53H82 288 aaPredicted RBP13.26□□□□□ -0.29
CDH3-202ENST00000429102 ECHDC2Q86YB7 292 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 C1orf131Q8NDD1 294 aaKnown RBP13.26□□□□□ -0.29
CDH3-202ENST00000429102 FBXL13Q8NEE6 735 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 MYLK2Q9H1R3 596 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 ZWILCHQ9H900 591 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 NOCTQ9UK39 431 aaKnown RBP13.26□□□□□ -0.29
CDH3-202ENST00000429102 SERPINA10Q9UK55 444 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 FRMPD4Q14CM0 1322 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 P4HBP07237 508 aaKnown RBP13.26□□□□□ -0.29
CDH3-202ENST00000429102 CIITAP33076 1130 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 RPL7AP62424 266 aaKnown RBP13.26□□□□□ -0.29
CDH3-202ENST00000429102 ZBTB16Q05516 673 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 CCDC33Q8N5R6 958 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 ZDHHC15Q96MV8 337 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 SYT11Q9BT88 431 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 TMEM121Q9BTD3 319 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 TMEM206Q9H813 350 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 C1orf112Q9NSG2 853 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 NOP53Q9NZM5 478 aaKnown RBP13.26□□□□□ -0.29
CDH3-202ENST00000429102 NKX1-2Q9UD57 310 aaPredicted RBP13.26□□□□□ -0.29
CDH3-202ENST00000429102 DIS3Q9Y2L1 958 aaKnown RBP13.26□□□□□ -0.29
CDH3-202ENST00000429102 KAT6AQ92794 2004 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 LRRD1A4D1F6 860 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 TLR3O15455 904 aaKnown RBP13.26□□□□□ -0.29
CDH3-202ENST00000429102 ENTPD5O75356 428 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 MAGEA4P43358 317 aa13.26□□□□□ -0.29
CDH3-202ENST00000429102 NT5C2P49902 561 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms