RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 PDE11AQ9HCR9 933 aa18.44■□□□□ 0.54
COL7A1-202ENST00000422991 DERAQ9Y315 318 aa18.44■□□□□ 0.54
COL7A1-202ENST00000422991 MRPL42Q9Y6G3 142 aaKnown RBP18.44■□□□□ 0.54
COL7A1-202ENST00000422991 CHD7Q9P2D1 2997 aa18.44■□□□□ 0.54
COL7A1-202ENST00000422991 ARHGEF15O94989 841 aa18.43■□□□□ 0.54
COL7A1-202ENST00000422991 CA3P07451 260 aa18.43■□□□□ 0.54
COL7A1-202ENST00000422991 LINC00271P0C7V0 271 aa18.43■□□□□ 0.54
COL7A1-202ENST00000422991 EPB41P11171 864 aaKnown RBP18.43■□□□□ 0.54
COL7A1-202ENST00000422991 RNASELQ05823 741 aaKnown RBP18.43■□□□□ 0.54
COL7A1-202ENST00000422991 SPAG1Q07617 926 aa18.43■□□□□ 0.54
COL7A1-202ENST00000422991 DSC1Q08554 894 aa18.43■□□□□ 0.54
COL7A1-202ENST00000422991 TMEM132DQ14C87 1099 aa18.43■□□□□ 0.54
COL7A1-202ENST00000422991 FILIP1Q7Z7B0 1213 aa18.43■□□□□ 0.54
COL7A1-202ENST00000422991 ZNF280BQ86YH2 543 aa18.43■□□□□ 0.54
COL7A1-202ENST00000422991 EFCAB13Q8IY85 973 aa18.43■□□□□ 0.54
COL7A1-202ENST00000422991 FIBCD1Q8N539 461 aa18.43■□□□□ 0.54
COL7A1-202ENST00000422991 ENOX1Q8TC92 643 aaKnown RBP18.43■□□□□ 0.54
COL7A1-202ENST00000422991 PLEKHO2Q8TD55 490 aa18.43■□□□□ 0.54
COL7A1-202ENST00000422991 KIF12Q96FN5 646 aa18.43■□□□□ 0.54
COL7A1-202ENST00000422991 BORCS6Q96GS4 357 aa18.43■□□□□ 0.54
COL7A1-202ENST00000422991 NAT10Q9H0A0 1025 aaKnown RBP18.43■□□□□ 0.54
COL7A1-202ENST00000422991 C2CD2Q9Y426 696 aa18.43■□□□□ 0.54
COL7A1-202ENST00000422991 PTPRJQ12913 1337 aa18.43■□□□□ 0.54
COL7A1-202ENST00000422991 TRANK1O15050 2925 aa18.43■□□□□ 0.54
COL7A1-202ENST00000422991 COL6A3P12111 3177 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 LINC01553A4QN01 128 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 DDHD2O94830 711 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 FGFR1OPO95684 399 aaKnown RBP18.42■□□□□ 0.54
COL7A1-202ENST00000422991 DNAJB2P25686 324 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 TUSC3Q13454 348 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 SURF1Q15526 300 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 ZBTB6Q15916 424 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 SPATA1Q5VX52 437 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 INTS8Q75QN2 995 aaKnown RBP18.42■□□□□ 0.54
COL7A1-202ENST00000422991 NT5DC4Q86YG4 428 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 TMC2Q8TDI7 906 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 PARD3BQ8TEW8 1205 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 CLP1Q92989 425 aaKnown RBP18.42■□□□□ 0.54
COL7A1-202ENST00000422991 C18orf25Q96B23 403 aaPredicted RBP18.42■□□□□ 0.54
COL7A1-202ENST00000422991 CCDC127Q96BQ5 260 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 CGRRF1Q99675 332 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 BPIFA3Q9BQP9 254 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 SRRTQ9BXP5 876 aaKnown RBP18.42■□□□□ 0.54
COL7A1-202ENST00000422991 NRDE2Q9H7Z3 1164 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 SLC38A7Q9NVC3 462 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 TUBGCP4Q9UGJ1 667 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 MSRAQ9UJ68 235 aa18.42■□□□□ 0.54
COL7A1-202ENST00000422991 TMEM265A0A087WTH1 108 aa18.41■□□□□ 0.54
COL7A1-202ENST00000422991 DLATP10515 647 aaKnown RBP18.41■□□□□ 0.54
COL7A1-202ENST00000422991 MCCD1P59942 119 aaPredicted RBP18.41■□□□□ 0.54
COL7A1-202ENST00000422991 MYL5Q02045 173 aa18.41■□□□□ 0.54
COL7A1-202ENST00000422991 SOX4Q06945 474 aaPredicted RBP18.41■□□□□ 0.54
COL7A1-202ENST00000422991 ENPEPQ07075 957 aa18.41■□□□□ 0.54
COL7A1-202ENST00000422991 BFSP1Q12934 665 aa18.41■□□□□ 0.54
COL7A1-202ENST00000422991 TPD52L1Q16890 204 aaPredicted RBP18.41■□□□□ 0.54
COL7A1-202ENST00000422991 WDR49Q8IV35 697 aa18.41■□□□□ 0.54
COL7A1-202ENST00000422991 COLGALT2Q8IYK4 626 aa18.41■□□□□ 0.54
COL7A1-202ENST00000422991 FAM193BQ96PV7 902 aaPredicted RBP18.41■□□□□ 0.54
COL7A1-202ENST00000422991 FNBP1Q96RU3 617 aa18.41■□□□□ 0.54
COL7A1-202ENST00000422991 NKX2-4Q9H2Z4 354 aa18.41■□□□□ 0.54
COL7A1-202ENST00000422991 THAP9Q9H5L6 903 aa18.41■□□□□ 0.54
COL7A1-202ENST00000422991 DNAJB4Q9UDY4 337 aa18.41■□□□□ 0.54
COL7A1-202ENST00000422991 UBQLN1Q9UMX0 589 aaKnown RBP18.41■□□□□ 0.54
COL7A1-202ENST00000422991 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.41■□□□□ 0.54
COL7A1-202ENST00000422991 LRRIQ3A6PVS8 624 aaPredicted RBP18.4■□□□□ 0.54
COL7A1-202ENST00000422991 XPOTO43592 962 aaKnown RBP18.4■□□□□ 0.54
COL7A1-202ENST00000422991 ZC3H11AO75152 810 aaKnown RBP eCLIP18.4■□□□□ 0.54
COL7A1-202ENST00000422991 GNA14O95837 355 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 KRT13P13646 458 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 LAG3P18627 525 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 CYP3A5P20815 502 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 ZNF165P49910 485 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 VAMP7P51809 220 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 ZNF445P59923 1031 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 CLDN10P78369 228 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 TAP1Q03518 808 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 CCDC40Q4G0X9 1142 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 C1orf220Q5T0J3 134 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 LMBRD2Q68DH5 695 aaPredicted RBP18.4■□□□□ 0.54
COL7A1-202ENST00000422991 LRSAM1Q6UWE0 723 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 FRMD5Q7Z6J6 570 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 IRF2BP1Q8IU81 584 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 AOPEPQ8N6M6 819 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 FAM84AQ96KN4 292 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 TMEM175Q9BSA9 504 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 GOLGA2P5Q9HBQ8 144 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 INTS13Q9NVM9 706 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 ARMCX3Q9UH62 379 aaPredicted RBP18.4■□□□□ 0.54
COL7A1-202ENST00000422991 STXBP5LQ9Y2K9 1186 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 NFE2L3Q9Y4A8 694 aa18.4■□□□□ 0.54
COL7A1-202ENST00000422991 COL4A4P53420 1690 aaPredicted RBP18.39■□□□□ 0.53
COL7A1-202ENST00000422991 CASTOR2A6NHX0 329 aa18.39■□□□□ 0.53
COL7A1-202ENST00000422991 TULP1O00294 542 aaPredicted RBP18.39■□□□□ 0.53
COL7A1-202ENST00000422991 IKBKBO14920 756 aa18.39■□□□□ 0.53
COL7A1-202ENST00000422991 SLC11A1P49279 550 aa18.39■□□□□ 0.53
COL7A1-202ENST00000422991 GUCY2FP51841 1108 aa18.39■□□□□ 0.53
COL7A1-202ENST00000422991 MARSP56192 900 aaKnown RBP18.39■□□□□ 0.53
COL7A1-202ENST00000422991 DLG4P78352 724 aa18.39■□□□□ 0.53
COL7A1-202ENST00000422991 TFAMQ00059 246 aaKnown RBP18.39■□□□□ 0.53
COL7A1-202ENST00000422991 NCAPHQ15003 741 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms