RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 NMT1P30419 496 aaKnown RBP11.39□□□□□ -0.59
USP54-204ENST00000422491 ITPK1Q13572 414 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 CCDC6Q16204 474 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 SLC15A2Q16348 729 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 ZC2HC1CQ53FD0 456 aaPredicted RBP11.39□□□□□ -0.59
USP54-204ENST00000422491 TTBK2Q6IQ55 1244 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 OTOAQ7RTW8 1153 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 ZC3H18Q86VM9 953 aaKnown RBP11.39□□□□□ -0.59
USP54-204ENST00000422491 SESTD1Q86VW0 696 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 ERMNQ8TAM6 284 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 CCDC77Q9BR77 488 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 NUP85Q9BW27 656 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 TAF1LQ8IZX4 1826 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 WNK3Q9BYP7 1800 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 MAGEA13PA6NCF6 341 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 ZBTB5O15062 677 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 TBX10O75333 385 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 CYP1A2P05177 515 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 ABHD2P08910 425 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 BCRP11274 1271 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 RRM1P23921 792 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 BTDP43251 543 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 SLC34A1Q06495 639 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 NR1H3Q13133 447 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 DYNC1I2Q13409 638 aaKnown RBP11.39□□□□□ -0.59
USP54-204ENST00000422491 PLEKHG4Q58EX7 1191 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 MOXD1Q6UVY6 613 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 CCNJLQ8IV13 435 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 KIAA0825Q8IV33 1275 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 MAIP1Q8WWC4 291 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 CRYGNQ8WXF5 182 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 PTPRN2Q92932 1015 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 HERPUD2Q9BSE4 406 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 ANO3Q9BYT9 981 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 FAM192AQ9GZU8 254 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 CAPN9O14815 690 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 GZMAP12544 262 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 GAP43P17677 238 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 MAN1A1P33908 653 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 HSPA2P54652 639 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 KPNB1Q14974 876 aaKnown RBP11.38□□□□□ -0.59
USP54-204ENST00000422491 SLC10A5Q5PT55 438 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 MTDHQ86UE4 582 aaKnown RBP11.38□□□□□ -0.59
USP54-204ENST00000422491 CLEC10AQ8IUN9 316 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 KSR1Q8IVT5 923 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 ARHGEF19Q8IW93 802 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 FAM81AQ8TBF8 368 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 FIZ1Q96SL8 496 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 PPP1R12CQ9BZL4 782 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 KIAA1586Q9HCI6 787 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 UBE2TQ9NPD8 197 aaPredicted RBP11.38□□□□□ -0.59
USP54-204ENST00000422491 METTL5Q9NRN9 209 aaKnown RBP11.38□□□□□ -0.59
USP54-204ENST00000422491 KANSL3Q9P2N6 904 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 NOCTQ9UK39 431 aaKnown RBP11.38□□□□□ -0.59
USP54-204ENST00000422491 IGKV6D-41A0A0C4DH26 115 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 USP17L10C9JJH3 530 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 CCDC22O60826 627 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 PSMG1O95456 288 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 GAS8O95995 478 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 LDHCP07864 332 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 RPA3P35244 121 aaPredicted RBP11.38□□□□□ -0.59
USP54-204ENST00000422491 SLC16A2P36021 539 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 ADCY8P40145 1251 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 CYP2J2P51589 502 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 EIF6P56537 245 aaKnown RBP11.38□□□□□ -0.59
USP54-204ENST00000422491 AP1B1Q10567 949 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 BFSP1Q12934 665 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 SLC1A5Q15758 541 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 ARMC3Q5W041 872 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 RINT1Q6NUQ1 792 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 CLEC4GQ6UXB4 293 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 TDRPQ86YL5 185 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 MARCH10Q8NA82 808 aaPredicted RBP11.38□□□□□ -0.59
USP54-204ENST00000422491 ZNF398Q8TD17 642 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 EPS8L1Q8TE68 723 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 GRK7Q8WTQ7 553 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 LENG9Q96B70 501 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 PTCD3Q96EY7 689 aaKnown RBP11.38□□□□□ -0.59
USP54-204ENST00000422491 BTBD10Q9BSF8 475 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 DCLK3Q9C098 648 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 UBE2OQ9C0C9 1292 aaKnown RBP11.38□□□□□ -0.59
USP54-204ENST00000422491 TRABDQ9H4I3 376 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 DMAP1Q9NPF5 467 aaPredicted RBP11.38□□□□□ -0.59
USP54-204ENST00000422491 AGPAT3Q9NRZ7 376 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 LRRC4BQ9NT99 713 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 PDP2Q9P2J9 529 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 SMG5Q9UPR3 1016 aaKnown RBP11.38□□□□□ -0.59
USP54-204ENST00000422491 FRMD4BQ9Y2L6 1034 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 SBF2Q86WG5 1849 aa11.38□□□□□ -0.59
USP54-204ENST00000422491 PDLIM1O00151 329 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 GSC2O15499 205 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 PSMC4P43686 418 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 SERPINB4P48594 390 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 VPS41P49754 854 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 CYP4A11Q02928 519 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 PRR16Q569H4 304 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 TBC1D9BQ66K14 1250 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 NOP9Q86U38 636 aaKnown RBP11.37□□□□□ -0.59
USP54-204ENST00000422491 KBTBD2Q8IY47 623 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 KRT82Q9NSB4 513 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms