RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 ANKRD1Q15327 319 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 UPP1Q16831 310 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 PABPC1LQ4VXU2 614 aaKnown RBP8.92□□□□□ -0.98
VIM-202ENST00000421459 SEZ6Q53EL9 994 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 ATF7IP2Q5U623 682 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.92□□□□□ -0.98
VIM-202ENST00000421459 TPRG1Q6ZUI0 275 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 DGLUCYQ7Z3D6 616 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 C18orf25Q96B23 403 aaPredicted RBP8.92□□□□□ -0.98
VIM-202ENST00000421459 ZMAT2Q96NC0 199 aaKnown RBP8.92□□□□□ -0.98
VIM-202ENST00000421459 ADPGKQ9BRR6 497 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 LTB4R2Q9NPC1 389 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 HEBP1Q9NRV9 189 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 MTRRQ9UBK8 725 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 MRPS23Q9Y3D9 190 aaKnown RBP8.92□□□□□ -0.98
VIM-202ENST00000421459 ZFP37Q9Y6Q3 630 aaPredicted RBP8.92□□□□□ -0.98
VIM-202ENST00000421459 PTPRZ1P23471 2315 aaPredicted RBP8.92□□□□□ -0.98
VIM-202ENST00000421459 ZFHX4Q86UP3 3567 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 ZMYM2Q9UBW7 1377 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 WDR27A2RRH5 827 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 CCDC169A6NNP5 214 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 SFI1A8K8P3 1242 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 PP2D1A8MPX8 630 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 E9PMD0 336 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 LAMTOR5O43504 91 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 SEC24BO95487 1268 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 OR52Z1P0C646 297 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 GJA1P17302 382 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 RPA1P27694 616 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 HOXA9P31269 272 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 CCT6AP40227 531 aaKnown RBP8.91□□□□□ -0.98
VIM-202ENST00000421459 CCR2P41597 374 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 ROR1Q01973 937 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 FZD5Q13467 585 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 RSPO4Q2I0M5 234 aaPredicted RBP8.91□□□□□ -0.98
VIM-202ENST00000421459 UVSSAQ2YD98 709 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 MTSS1LQ765P7 747 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 TAS1R3Q7RTX0 852 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 GPIHBP1Q8IV16 184 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 CCDC83Q8IWF9 413 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 HS6ST3Q8IZP7 471 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 C4orf32Q8N8J7 132 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 RUBCNQ92622 972 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 SHDQ96IW2 340 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 ZBTB45Q96K62 511 aaPredicted RBP8.91□□□□□ -0.98
VIM-202ENST00000421459 ZSWIM3Q96MP5 696 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 CORO1BQ9BR76 489 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 BCO2Q9BYV7 579 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 CDT1Q9H211 546 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 BHMT2Q9H2M3 363 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 SEMA4AQ9H3S1 761 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 KIAA1024Q9UPX6 916 aa8.91□□□□□ -0.98
VIM-202ENST00000421459 TDRD15B5MCY1 1934 aaKnown RBP8.9□□□□□ -0.98
VIM-202ENST00000421459 NCANO14594 1321 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 TMEM189-UBE2V1I3L0A0 370 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 K7ERI5 159 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 PODXLO00592 558 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 KINO60870 393 aaKnown RBP8.9□□□□□ -0.98
VIM-202ENST00000421459 HARSP12081 509 aaKnown RBP8.9□□□□□ -0.98
VIM-202ENST00000421459 FCARP24071 287 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 CDC25AP30304 524 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 HOXC13P31276 330 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 NPTX2P47972 431 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 CDR1P51861 262 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 PEX3P56589 373 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 ANAPC15P60006 121 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 PRKCQQ04759 706 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 ELAVL2Q12926 359 aaKnown RBP8.9□□□□□ -0.98
VIM-202ENST00000421459 DCAF4L1Q3SXM0 396 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 FAM78AQ5JUQ0 283 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 PRSS36Q5K4E3 855 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 VARS2Q5ST30 1063 aaKnown RBP8.9□□□□□ -0.98
VIM-202ENST00000421459 ALKAL1Q6UXT8 129 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 DAW1Q8N136 415 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 IFT74Q96LB3 600 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 ACO2Q99798 780 aaKnown RBP8.9□□□□□ -0.98
VIM-202ENST00000421459 TARS2Q9BW92 718 aaKnown RBP8.9□□□□□ -0.98
VIM-202ENST00000421459 CYP4F11Q9HBI6 524 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 PTPRHQ9HD43 1115 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 DDX19AQ9NUU7 478 aaKnown RBP8.9□□□□□ -0.98
VIM-202ENST00000421459 NDRG2Q9UN36 371 aaKnown RBP8.9□□□□□ -0.98
VIM-202ENST00000421459 BACE2Q9Y5Z0 518 aa8.9□□□□□ -0.98
VIM-202ENST00000421459 RIF1Q5UIP0 2472 aaKnown RBP8.89□□□□□ -0.99
VIM-202ENST00000421459 DOCK8Q8NF50 2099 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 DOCK6Q96HP0 2047 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 ABLIM1O14639 778 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 TBC1D4O60343 1298 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 HIP1RO75146 1068 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 MOSPD3O75425 235 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 ECI2O75521 394 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 ABLIM3O94929 683 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 LRG1P02750 347 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 PTPN2P17706 415 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 VIPR2P41587 438 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 GRM5P41594 1212 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 RBM25P49756 843 aaKnown RBP8.89□□□□□ -0.99
VIM-202ENST00000421459 TOB1P50616 345 aaPredicted RBP8.89□□□□□ -0.99
VIM-202ENST00000421459 SPAG1Q07617 926 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 RAD51AP2Q09MP3 1159 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 MTAPQ13126 283 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms