RNA–Protein interactions for RNA: ENST00000418170.5

HMGXB4-202, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 4,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-202ENST00000418170 NSL1Q96IY1 281 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 TMEM165Q9HC07 324 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 DNAJC12Q9UKB3 198 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 SPATA31A1Q5TZJ5 1347 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 USP17L3A6NCW0 530 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 USP17L4A6NCW7 530 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 TMEM110-MUSTN1A8MSY1 372 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 CALUO43852 315 aaPredicted RBP8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 ATP9BO43861 1147 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 STARD3NLO95772 234 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 VAV1P15498 845 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 MAGEA10P43363 369 aaPredicted RBP8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 PABPC4Q13310 644 aaKnown RBP eCLIP8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 PPP2R5CQ13362 524 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 THOC5Q13769 683 aaKnown RBP8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 SYDE1Q6ZW31 735 aaPredicted RBP8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 USP17L1Q7RTZ2 530 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 PPP2R3CQ969Q6 453 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 NSUN4Q96CB9 384 aaKnown RBP8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 TMEM47Q9BQJ4 181 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 TRAIPQ9BWF2 469 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 RHBDL2Q9NX52 303 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 KANSL3Q9P2N6 904 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 A6NJR5 290 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 F8W8V4 182 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 SORBS3O60504 671 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 RNASEH1O60930 286 aaKnown RBP8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 NR3C1P04150 777 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 FGFR1P11362 822 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 CASP4P49662 377 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 DEUP1Q05D60 604 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 PDCD7Q8N8D1 485 aaKnown RBP8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 HAS1Q92839 578 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 DYDC2Q96IM9 177 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 FNBP1Q96RU3 617 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 SEPT11Q9NVA2 429 aaKnown RBP8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 TAS2R1Q9NYW7 299 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 KIAA1024Q9UPX6 916 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 FAM170AA1A519 330 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 CFAP69A5D8W1 941 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 TOM1O60784 492 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 ABHD2P08910 425 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 TROVE2P10155 538 aaKnown RBP eCLIP8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 DLATP10515 647 aaKnown RBP8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 PIM1P11309 404 aaPredicted RBP8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 RPL13P26373 211 aaKnown RBP8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 RPA3P35244 121 aaPredicted RBP8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 MESDQ14696 234 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 ARSHQ5FYA8 562 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 ACAD11Q709F0 780 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 PRUNE1Q86TP1 453 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 ZNF75CPQ92670 426 aaPredicted RBP8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 ZHX3Q9H4I2 956 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 TRABDQ9H4I3 376 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 SENP1Q9P0U3 644 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 ANKFY1Q9P2R3 1169 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 ANAPC5Q9UJX4 755 aa8.52□□□□□ -1.05
HMGXB4-202ENST00000418170 SMIM31A0A1B0GVY4 71 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 ANPEPP15144 967 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 ALDH1B1P30837 517 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 RAP1GDS1P52306 607 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 TTLL12Q14166 644 aaPredicted RBP8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 KIF22Q14807 665 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 SLC1A5Q15758 541 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 RINLQ6ZS11 566 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 PIGBQ92521 554 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 PPP1R14BQ96C90 147 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 PWWP2AQ96N64 755 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 TTC25Q96NG3 672 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 EPB41L1Q9H4G0 881 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 DNAJB4Q9UDY4 337 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 ASTN1O14525 1302 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 MTA2O94776 668 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 KRT18P05783 430 aaKnown RBP8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 USP17L8P0C7I0 530 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 AMPD1P23109 780 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 GCAP28676 217 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 MAP3K10Q02779 954 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 MECOMQ03112 1051 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 CDC16Q13042 620 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 HNRNPDQ14103 355 aaKnown RBP8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 R3HDM1Q15032 1099 aaKnown RBP8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 Q4G0T1 1027 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 SGO2Q562F6 1265 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 TDRPQ86YL5 185 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 ARHGAP24Q8N264 748 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 C1orf54Q8WWF1 131 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 SMC6Q96SB8 1091 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 KIAA1586Q9HCI6 787 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 MCM9Q9NXL9 1143 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 STX8Q9UNK0 236 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 NIP7Q9Y221 180 aaKnown RBP eCLIP8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 FSCN2O14926 492 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 DNAJC6O75061 913 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 FTLP02792 175 aaPredicted RBP8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 TSPY3P0CV98 308 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 TSPY8P0CW00 308 aa8.51□□□□□ -1.05
HMGXB4-202ENST00000418170 ATF2P15336 505 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms