RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 SNF8Q96H20 258 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 DDX23Q9BUQ8 820 aaKnown RBP12.67□□□□□ -0.38
PTPRF-205ENST00000414879 ABHD16BQ9H3Z7 469 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 KIF9Q9HAQ2 790 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.67□□□□□ -0.38
PTPRF-205ENST00000414879 DISP2A7MBM2 1401 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 TADA2AO75478 443 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 MTA1Q13330 715 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 PGM5Q15124 567 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 PCBP1Q15365 356 aaKnown RBP eCLIP12.67□□□□□ -0.382e-6■■■■■ 32.7
PTPRF-205ENST00000414879 DEPDC1BQ8WUY9 529 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 AP1M1Q9BXS5 423 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 TAF1DQ9H5J8 278 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-205ENST00000414879 SNX9Q9Y5X1 595 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 PMLP29590 882 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 ACOT2P49753 483 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 NNTQ13423 1086 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 GIT2Q14161 759 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 PASD1Q8IV76 773 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 DSEQ9UL01 958 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 PLAGL2Q9UPG8 496 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 A0A087WUV0 522 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-205ENST00000414879 APOL1O14791 398 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 PAX3P23760 479 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 RAB27AP51159 221 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 BTNL9Q6UXG8 535 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 GPRC5DQ9NZD1 345 aa12.67□□□□□ -0.38
PTPRF-205ENST00000414879 MED24O75448 989 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 ZSCAN26Q16670 478 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 ANO4Q32M45 955 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 LSM7Q9UK45 103 aaKnown RBP12.66□□□□□ -0.38
PTPRF-205ENST00000414879 GTF3C4Q9UKN8 822 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 PCDHB8Q9UN66 801 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 MRFAP1Q9Y605 127 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 PRAMEF18Q5VWM3 479 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 C1orf228Q6PIY5 440 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 GBP7Q8N8V2 638 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-205ENST00000414879 ATP11CQ8NB49 1132 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 STKLD1Q8NE28 680 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 COLEC11Q9BWP8 271 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 FSD1LQ9BXM9 530 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 PLEKHA4Q9H4M7 779 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 CHEK2O96017 543 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 ADORA2BP29275 332 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 NT5DC1Q5TFE4 455 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 TAF2Q6P1X5 1199 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 RIOX2Q8IUF8 465 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 ZMYND15Q9H091 742 aa12.66□□□□□ -0.38
PTPRF-205ENST00000414879 A0A1B0GUA9 196 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 GZMAP12544 262 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 GALCP54803 685 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 NPEPPSP55786 919 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 TMED2Q15363 201 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 P3H1Q32P28 736 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 ZPBP2Q6X784 338 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 ZNF720Q7Z2F6 126 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 TRIM59Q8IWR1 403 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 CEP120Q8N960 986 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 IFT43Q96FT9 208 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 CGRRF1Q99675 332 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 LMCD1Q9NZU5 365 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 ARP10275 920 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 SLC2A3P11169 496 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 PTPN21Q16825 1174 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 IQSEC1Q6DN90 963 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 FOXR2Q6PJQ5 311 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 CAPN12Q6ZSI9 719 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 EP400NLQ6ZTU2 488 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 CEP57Q86XR8 500 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 HOMEZQ8IX15 550 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 HDAC11Q96DB2 347 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 DDX27Q96GQ7 796 aaKnown RBP12.65□□□□□ -0.38
PTPRF-205ENST00000414879 DDX4Q9NQI0 724 aaKnown RBP12.65□□□□□ -0.38
PTPRF-205ENST00000414879 KDM3BQ7LBC6 1761 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 KPNA7A9QM74 516 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 H7C4K7 107 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 CYBBP04839 570 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 TMEM119Q4V9L6 283 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 ZNF410Q86VK4 478 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 WDR49Q8IV35 697 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 RNPC3Q96LT9 517 aaKnown RBP12.65□□□□□ -0.38
PTPRF-205ENST00000414879 TARS2Q9BW92 718 aaKnown RBP12.65□□□□□ -0.38
PTPRF-205ENST00000414879 RSAD1Q9HA92 442 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 CYP3A7-CYP3A51PA0A087WV96 503 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 FAM237AA0A1B0GTK4 181 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 ZBBXA8MT70 800 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 SPAG6O75602 509 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 NR1D1P20393 614 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 CYP3A7P24462 503 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 CDH6P55285 790 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 ELAVL2Q12926 359 aaKnown RBP12.65□□□□□ -0.38
PTPRF-205ENST00000414879 REM2Q8IYK8 340 aaPredicted RBP12.65□□□□□ -0.38
PTPRF-205ENST00000414879 TC2NQ8N9U0 490 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 ASAP3Q8TDY4 903 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 HPDLQ96IR7 371 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 SAYSD1Q9NPB0 183 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 TRAF3IP3Q9Y228 551 aa12.65□□□□□ -0.38
PTPRF-205ENST00000414879 BUB1BO60566 1050 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-205ENST00000414879 MCF2P10911 925 aa12.64□□□□□ -0.39
PTPRF-205ENST00000414879 ODC1P11926 461 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms