RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 A6NHS1 94 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 TCP11X1B4DZS4 312 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 ANKRD63C9JTQ0 380 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 C6orf229H3BNL8 230 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 SMAPO00193 183 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 IGF2BP3O00425 579 aaKnown RBP eCLIP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 PPEF1O14829 653 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 PPP1R12AO14974 1030 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 GAS7O60861 476 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 SMNDC1O75940 238 aaKnown RBP eCLIP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 SERPINB2P05120 415 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 P4HBP07237 508 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 GYS1P13807 737 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 CYP11B1P15538 503 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 TAC1P20366 129 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 FGFR4P22455 802 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 CALRP27797 417 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 ADSSP30520 456 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 GBP2P32456 591 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 CRKP46108 304 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 MXI1P50539 228 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 RASSF2P50749 326 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 POLGP54098 1239 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 CLNS1AP54105 237 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 RTP1P59025 263 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 BPIFB4P59827 614 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 ATP11AP98196 1134 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 IL9RQ01113 521 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 RNASELQ05823 741 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 PICALMQ13492 652 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 COG2Q14746 738 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 SGSM1Q2NKQ1 1148 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 SGO2Q562F6 1265 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 KRT39Q6A163 491 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 CGB2Q6NT52 195 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 C15orf39Q6ZRI6 1047 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 CLEC10AQ8IUN9 316 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 FITM2Q8N6M3 262 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 KREMEN1Q96MU8 473 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 TUBB6Q9BUF5 446 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 FRMD8P1Q9BZ68 369 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 MTFR1LQ9H019 292 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 MAF1Q9H063 256 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 TMEM117Q9H0C3 514 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 CYLDQ9NQC7 956 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 FAM198AQ9UFP1 575 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 BAIAP2L1Q9UHR4 511 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 SLC24A2Q9UI40 661 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 PRR12Q9ULL5 1215 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 EXOC7Q9UPT5 735 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 CNTN6Q9UQ52 1028 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 DRG1Q9Y295 367 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 MRPL11Q9Y3B7 192 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 USH1CQ9Y6N9 552 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 ARHGEF35A5YM69 484 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 FAM47DPA6NHR8 397 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 THAP12O43422 761 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 ECE2O60344 883 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 HIP1RO75146 1068 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 CYP1A1P04798 512 aaPredicted RBP6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 POLR2MP0CAP2 368 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 TRIM49P0CI25 452 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 TRIM49CP0CI26 452 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 ATP2A2P16615 1042 aaKnown RBP6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 KLRC2P26717 231 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 ZNF76P36508 570 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 EIF6P56537 245 aaKnown RBP6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 PDK4Q16654 411 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 AOC3Q16853 763 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 C11orf91Q3C1V1 193 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 TMEM63BQ5T3F8 832 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 LRRC38Q5VT99 294 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 NUGGCQ68CJ6 796 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 BZW1Q7L1Q6 419 aaKnown RBP6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 FAM160B2Q86V87 743 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 DNAAF5Q86Y56 855 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 C4orf19Q8IY42 314 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 EXD1Q8NHP7 514 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 SPIRE2Q8WWL2 714 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 STAMBPL1Q96FJ0 436 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 DDX27Q96GQ7 796 aaKnown RBP6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 CFAP57Q96MR6 1250 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 TGS1Q96RS0 853 aaKnown RBP6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 UNC45AQ9H3U1 944 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 ANKEF1Q9NU02 776 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 FGFR1OP2Q9NVK5 253 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 NKIRAS1Q9NYS0 192 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 NINJ2Q9NZG7 142 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 HSPBP1Q9NZL4 362 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 ADAM22Q9P0K1 906 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 TLDC2A0PJX2 215 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 POLRMTO00411 1230 aaKnown RBP6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 SPOPO43791 374 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 KRT16P08779 473 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 BRAFP15056 766 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 ATF2P15336 505 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 CYP2J2P51589 502 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 STAT2P52630 851 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 KCNJ2P63252 427 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms