RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 ZNF445P59923 1031 aa17.3■□□□□ 0.36
HMGA1-204ENST00000401473 SMAD3P84022 425 aaKnown RBP17.3■□□□□ 0.36
HMGA1-204ENST00000401473 PPP2R3AQ06190 1150 aa17.3■□□□□ 0.36
HMGA1-204ENST00000401473 SOX4Q06945 474 aaPredicted RBP17.3■□□□□ 0.36
HMGA1-204ENST00000401473 BTG3Q14201 252 aaPredicted RBP17.3■□□□□ 0.36
HMGA1-204ENST00000401473 HSP90AA4PQ58FG1 418 aa17.3■□□□□ 0.36
HMGA1-204ENST00000401473 C1orf220Q5T0J3 134 aa17.3■□□□□ 0.36
HMGA1-204ENST00000401473 FAM186BQ8IYM0 893 aa17.3■□□□□ 0.36
HMGA1-204ENST00000401473 ZNF516Q92618 1163 aa17.3■□□□□ 0.36
HMGA1-204ENST00000401473 C18orf25Q96B23 403 aaPredicted RBP17.3■□□□□ 0.36
HMGA1-204ENST00000401473 LRCH3Q96II8 777 aa17.3■□□□□ 0.36
HMGA1-204ENST00000401473 CEP63Q96MT8 703 aa17.3■□□□□ 0.36
HMGA1-204ENST00000401473 MKNK1Q9BUB5 465 aa17.3■□□□□ 0.36
HMGA1-204ENST00000401473 HSD3B7Q9H2F3 369 aa17.3■□□□□ 0.36
HMGA1-204ENST00000401473 CWH43Q9H720 699 aa17.3■□□□□ 0.36
HMGA1-204ENST00000401473 DNAJB4Q9UDY4 337 aa17.3■□□□□ 0.36
HMGA1-204ENST00000401473 NFE2L3Q9Y4A8 694 aa17.3■□□□□ 0.36
HMGA1-204ENST00000401473 PCDHA11Q9Y5I1 949 aa17.3■□□□□ 0.36
HMGA1-204ENST00000401473 MYO7AQ13402 2215 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 MAPK13O15264 365 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 CA3P07451 260 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 IGFBP6P24592 240 aaPredicted RBP17.29■□□□□ 0.36
HMGA1-204ENST00000401473 MCCD1P59942 119 aaPredicted RBP17.29■□□□□ 0.36
HMGA1-204ENST00000401473 PSMD6Q15008 389 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 IQCB1Q15051 598 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 LMBRD2Q68DH5 695 aaPredicted RBP17.29■□□□□ 0.36
HMGA1-204ENST00000401473 DHX40Q8IX18 779 aaKnown RBP17.29■□□□□ 0.36
HMGA1-204ENST00000401473 SP7Q8TDD2 431 aaPredicted RBP17.29■□□□□ 0.36
HMGA1-204ENST00000401473 RPS6KC1Q96S38 1066 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 BPIFA3Q9BQP9 254 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 PAAF1Q9BRP4 392 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 NRDE2Q9H7Z3 1164 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 GOLGA2P5Q9HBQ8 144 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 FANCLQ9NW38 375 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 KANSL3Q9P2N6 904 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 RALGAPA2Q2PPJ7 1873 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 DLATP10515 647 aaKnown RBP17.29■□□□□ 0.36
HMGA1-204ENST00000401473 DNAJB2P25686 324 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 CLDN10P78369 228 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 CD302Q8IX05 232 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 CMTR2Q8IYT2 770 aaKnown RBP17.29■□□□□ 0.36
HMGA1-204ENST00000401473 OR5B17Q8NGF7 314 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 RABGGTAQ92696 567 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 KIF12Q96FN5 646 aa17.29■□□□□ 0.36
HMGA1-204ENST00000401473 MRPL42Q9Y6G3 142 aaKnown RBP17.29■□□□□ 0.36
HMGA1-204ENST00000401473 PRUNE2Q8WUY3 3088 aa17.28■□□□□ 0.36
HMGA1-204ENST00000401473 SCN1AP35498 2009 aa17.28■□□□□ 0.36
HMGA1-204ENST00000401473 LRRIQ3A6PVS8 624 aaPredicted RBP17.28■□□□□ 0.36
HMGA1-204ENST00000401473 IL18RAPO95256 599 aa17.28■□□□□ 0.36
HMGA1-204ENST00000401473 GUCY2FP51841 1108 aa17.28■□□□□ 0.36
HMGA1-204ENST00000401473 RNASELQ05823 741 aaKnown RBP17.28■□□□□ 0.36
HMGA1-204ENST00000401473 DSC1Q08554 894 aa17.28■□□□□ 0.36
HMGA1-204ENST00000401473 BFSP1Q12934 665 aa17.28■□□□□ 0.36
HMGA1-204ENST00000401473 INTS8Q75QN2 995 aaKnown RBP17.28■□□□□ 0.36
HMGA1-204ENST00000401473 COLGALT2Q8IYK4 626 aa17.28■□□□□ 0.36
HMGA1-204ENST00000401473 AOPEPQ8N6M6 819 aa17.28■□□□□ 0.36
HMGA1-204ENST00000401473 URGCPQ8TCY9 931 aa17.28■□□□□ 0.36
HMGA1-204ENST00000401473 NAT10Q9H0A0 1025 aaKnown RBP17.28■□□□□ 0.36
HMGA1-204ENST00000401473 CBX8Q9HC52 389 aa17.28■□□□□ 0.36
HMGA1-204ENST00000401473 TUBGCP4Q9UGJ1 667 aa17.28■□□□□ 0.36
HMGA1-204ENST00000401473 SLC16A3O15427 465 aaKnown RBP17.27■□□□□ 0.36
HMGA1-204ENST00000401473 EPB41P11171 864 aaKnown RBP17.27■□□□□ 0.36
HMGA1-204ENST00000401473 PBX3P40426 434 aa17.27■□□□□ 0.36
HMGA1-204ENST00000401473 VAMP7P51809 220 aa17.27■□□□□ 0.36
HMGA1-204ENST00000401473 MYL5Q02045 173 aa17.27■□□□□ 0.36
HMGA1-204ENST00000401473 GRIK3Q13003 919 aa17.27■□□□□ 0.36
HMGA1-204ENST00000401473 TPD52L1Q16890 204 aaPredicted RBP17.27■□□□□ 0.36
HMGA1-204ENST00000401473 NKX2-4Q9H2Z4 354 aa17.27■□□□□ 0.36
HMGA1-204ENST00000401473 C2CD2Q9Y426 696 aa17.27■□□□□ 0.36
HMGA1-204ENST00000401473 LINC01553A4QN01 128 aa17.27■□□□□ 0.35
HMGA1-204ENST00000401473 TRIM49P0CI25 452 aa17.27■□□□□ 0.35
HMGA1-204ENST00000401473 TRIM49CP0CI26 452 aa17.27■□□□□ 0.35
HMGA1-204ENST00000401473 MARSP56192 900 aaKnown RBP17.27■□□□□ 0.35
HMGA1-204ENST00000401473 TMEM132DQ14C87 1099 aa17.27■□□□□ 0.35
HMGA1-204ENST00000401473 FRMD5Q7Z6J6 570 aa17.27■□□□□ 0.35
HMGA1-204ENST00000401473 LUZP1Q86V48 1076 aa17.27■□□□□ 0.35
HMGA1-204ENST00000401473 LRRC43Q8N309 656 aa17.27■□□□□ 0.35
HMGA1-204ENST00000401473 TMC2Q8TDI7 906 aa17.27■□□□□ 0.35
HMGA1-204ENST00000401473 RSPH1Q8WYR4 309 aa17.27■□□□□ 0.35
HMGA1-204ENST00000401473 CLP1Q92989 425 aaKnown RBP17.27■□□□□ 0.35
HMGA1-204ENST00000401473 FNBP1Q96RU3 617 aa17.27■□□□□ 0.35
HMGA1-204ENST00000401473 MRPL9Q9BYD2 267 aaKnown RBP17.27■□□□□ 0.35
HMGA1-204ENST00000401473 THAP9Q9H5L6 903 aa17.27■□□□□ 0.35
HMGA1-204ENST00000401473 INTS13Q9NVM9 706 aa17.27■□□□□ 0.35
HMGA1-204ENST00000401473 ARMCX3Q9UH62 379 aaPredicted RBP17.27■□□□□ 0.35
HMGA1-204ENST00000401473 CASTOR2A6NHX0 329 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 NT5C1B-RDH14C9J2C7 533 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 F8W810 466 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 IKBKBO14920 756 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 ZC3H11AO75152 810 aaKnown RBP eCLIP17.26■□□□□ 0.352e-11■□□□□ 8.9
HMGA1-204ENST00000401473 TNNI1P19237 187 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 TFAMQ00059 246 aaKnown RBP17.26■□□□□ 0.35
HMGA1-204ENST00000401473 TAP1Q03518 808 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 PPP3CAQ08209 521 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 TUSC3Q13454 348 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 SURF1Q15526 300 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 RAB30Q15771 203 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 CDKAL1Q5VV42 579 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 CREBRFQ8IUR6 639 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 FIBCD1Q8N539 461 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms