RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 INPP5FQ9Y2H2 1132 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 STYXL1Q9Y6J8 313 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 DUSP10Q9Y6W6 482 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 SCN5AQ14524 2016 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 ASAP2O43150 1006 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 GAS2O43903 313 aaKnown RBP12.64□□□□□ -0.39
SKA3-203ENST00000400018 PHACTR2O75167 634 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 RECQL4O94761 1208 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 HLA-DRAP01903 254 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 WEE2P0C1S8 567 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 GATMP50440 423 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 CCDC142Q17RM4 750 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 TDRD12Q587J7 1177 aaKnown RBP12.64□□□□□ -0.39
SKA3-203ENST00000400018 UBXN11Q5T124 520 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 GOLGA5Q8TBA6 731 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 HASPINQ8TF76 798 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 ZNF333Q96JL9 665 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 KREMEN1Q96MU8 473 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 METTL14Q9HCE5 456 aaKnown RBP12.64□□□□□ -0.39
SKA3-203ENST00000400018 LZTFL1Q9NQ48 299 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 MIOSQ9NXC5 875 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 TNFSF13BQ9Y275 285 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 SIP14410 1827 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 PIGRP01833 764 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 CFHP08603 1231 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 GFPT1Q06210 699 aaPredicted RBP12.63□□□□□ -0.39
SKA3-203ENST00000400018 DRAP1Q14919 205 aaPredicted RBP12.63□□□□□ -0.39
SKA3-203ENST00000400018 GPNMBQ14956 572 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 ZPBP2Q6X784 338 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 CTU1Q7Z7A3 348 aaKnown RBP12.63□□□□□ -0.39
SKA3-203ENST00000400018 SMG8Q8ND04 991 aaKnown RBP12.63□□□□□ -0.39
SKA3-203ENST00000400018 SLC20A1Q8WUM9 679 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 GPR88Q9GZN0 384 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 CAPN11Q9UMQ6 739 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 NUB1Q9Y5A7 615 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 RCCD1A6NED2 376 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 ZNF263O14978 683 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 GNRH1P01148 92 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 C4BPAP04003 597 aaKnown RBP12.63□□□□□ -0.39
SKA3-203ENST00000400018 ITGB3P05106 788 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 GNAT1P11488 350 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 CST5P28325 142 aaPredicted RBP12.63□□□□□ -0.39
SKA3-203ENST00000400018 PIK3CAP42336 1068 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 TLE2Q04725 743 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 SOX4Q06945 474 aaPredicted RBP12.63□□□□□ -0.39
SKA3-203ENST00000400018 FAM117BQ6P1L5 589 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 ZNF771Q7L3S4 317 aaPredicted RBP12.63□□□□□ -0.39
SKA3-203ENST00000400018 C12orf56Q8IXR9 622 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 MYRIPQ8NFW9 859 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 SPAG5Q96R06 1193 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 RPF1Q9H9Y2 349 aaKnown RBP12.63□□□□□ -0.39
SKA3-203ENST00000400018 PRDM5Q9NQX1 630 aaPredicted RBP12.63□□□□□ -0.39
SKA3-203ENST00000400018 IPPQ9Y573 584 aa12.63□□□□□ -0.39
SKA3-203ENST00000400018 A0A1W2PQC6 194 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 ARVCFO00192 962 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 CSPG5O95196 566 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 MLH1P40692 756 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 CRYBB1P53674 252 aaPredicted RBP12.62□□□□□ -0.39
SKA3-203ENST00000400018 TRIM71Q2Q1W2 868 aaKnown RBP12.62□□□□□ -0.39
SKA3-203ENST00000400018 DPH6Q7L8W6 267 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 RTN4RL1Q86UN2 441 aaPredicted RBP12.62□□□□□ -0.39
SKA3-203ENST00000400018 HVCN1Q96D96 273 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 KIF12Q96FN5 646 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.62□□□□□ -0.39
SKA3-203ENST00000400018 RAB20Q9NX57 234 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 TRPV2Q9Y5S1 764 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 SCN1AP35498 2009 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 I3L4J1 428 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 POMCP01189 267 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 EIF4A3P38919 411 aaKnown RBP12.62□□□□□ -0.39
SKA3-203ENST00000400018 PBX3P40426 434 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 MGAT3Q09327 533 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 KRT39Q6A163 491 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 TRAPPC11Q7Z392 1133 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 BRSK2Q8IWQ3 736 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 C1orf127Q8N9H9 656 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 KIAA1524Q8TCG1 905 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 GAD1Q99259 594 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 ADAM2Q99965 735 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 MKNK1Q9BUB5 465 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 PACSIN1Q9BY11 444 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 SEPT11Q9NVA2 429 aaKnown RBP12.62□□□□□ -0.39
SKA3-203ENST00000400018 IMPACTQ9P2X3 320 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 SIX4Q9UIU6 781 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.62□□□□□ -0.39
SKA3-203ENST00000400018 FRMPD3Q5JV73 1810 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 VCANP13611 3396 aa12.62□□□□□ -0.39
SKA3-203ENST00000400018 M0QZ92 97 aa12.61□□□□□ -0.39
SKA3-203ENST00000400018 CYP26A1O43174 497 aa12.61□□□□□ -0.39
SKA3-203ENST00000400018 NBNO60934 754 aa12.61□□□□□ -0.39
SKA3-203ENST00000400018 SGPL1O95470 568 aa12.61□□□□□ -0.39
SKA3-203ENST00000400018 PSMD6Q15008 389 aa12.61□□□□□ -0.39
SKA3-203ENST00000400018 ARHGEF6Q15052 776 aa12.61□□□□□ -0.39
SKA3-203ENST00000400018 NFIL3Q16649 462 aa12.61□□□□□ -0.39
SKA3-203ENST00000400018 FBXO47Q5MNV8 452 aa12.61□□□□□ -0.39
SKA3-203ENST00000400018 SLFN12LQ6IEE8 588 aa12.61□□□□□ -0.39
SKA3-203ENST00000400018 LLGL2Q6P1M3 1020 aa12.61□□□□□ -0.39
SKA3-203ENST00000400018 PDXDC1Q6P996 788 aa12.61□□□□□ -0.39
SKA3-203ENST00000400018 TRAF7Q6Q0C0 670 aa12.61□□□□□ -0.39
SKA3-203ENST00000400018 ZNF410Q86VK4 478 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms