RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 GPC5P78333 572 aa31.31■■■□□ 2.6
HMGB1-205ENST00000399494 ATP2C1P98194 919 aaPredicted RBP31.31■■■□□ 2.6
HMGB1-205ENST00000399494 PDZRN4Q6ZMN7 1036 aaPredicted RBP31.31■■■□□ 2.6
HMGB1-205ENST00000399494 DAXXQ9UER7 740 aaPredicted RBP31.31■■■□□ 2.6
HMGB1-205ENST00000399494 OR1D2P34982 312 aa31.3■■■□□ 2.6
HMGB1-205ENST00000399494 EFNA5P52803 228 aa31.3■■■□□ 2.6
HMGB1-205ENST00000399494 FOXK2Q01167 660 aa31.3■■■□□ 2.6
HMGB1-205ENST00000399494 UVSSAQ2YD98 709 aa31.3■■■□□ 2.6
HMGB1-205ENST00000399494 DCAF4L1Q3SXM0 396 aa31.3■■■□□ 2.6
HMGB1-205ENST00000399494 SPECC1Q5M775 1068 aa31.3■■■□□ 2.6
HMGB1-205ENST00000399494 CD300LGQ6UXG3 332 aa31.3■■■□□ 2.6
HMGB1-205ENST00000399494 FGF13Q92913 245 aa31.3■■■□□ 2.6
HMGB1-205ENST00000399494 PPP1R10Q96QC0 940 aaKnown RBP31.3■■■□□ 2.6
HMGB1-205ENST00000399494 KIFC3Q9BVG8 833 aa31.3■■■□□ 2.6
HMGB1-205ENST00000399494 SEMA4AQ9H3S1 761 aa31.3■■■□□ 2.6
HMGB1-205ENST00000399494 MTMR6Q9Y217 621 aa31.3■■■□□ 2.6
HMGB1-205ENST00000399494 WDR87Q6ZQQ6 2873 aa31.3■■■□□ 2.6
HMGB1-205ENST00000399494 TMEM189-UBE2V1I3L0A0 370 aa31.29■■■□□ 2.6
HMGB1-205ENST00000399494 XYLBO75191 536 aa31.29■■■□□ 2.6
HMGB1-205ENST00000399494 STARD6P59095 220 aa31.29■■■□□ 2.6
HMGB1-205ENST00000399494 RESTQ13127 1097 aa31.29■■■□□ 2.6
HMGB1-205ENST00000399494 PDIA5Q14554 519 aa31.29■■■□□ 2.6
HMGB1-205ENST00000399494 AXDND1Q5T1B0 1012 aaPredicted RBP31.29■■■□□ 2.6
HMGB1-205ENST00000399494 ITFG1Q8TB96 612 aa31.29■■■□□ 2.6
HMGB1-205ENST00000399494 IFT74Q96LB3 600 aa31.29■■■□□ 2.6
HMGB1-205ENST00000399494 POLIQ9UNA4 740 aa31.29■■■□□ 2.6
HMGB1-205ENST00000399494 STK24Q9Y6E0 443 aa31.29■■■□□ 2.6
HMGB1-205ENST00000399494 VWA8A3KMH1 1905 aa31.28■■■□□ 2.6
HMGB1-205ENST00000399494 BMP15O95972 392 aa31.28■■■□□ 2.6
HMGB1-205ENST00000399494 POU2F2P09086 479 aa31.28■■■□□ 2.6
HMGB1-205ENST00000399494 CCT6AP40227 531 aaKnown RBP31.28■■■□□ 2.6
HMGB1-205ENST00000399494 CLCNKBP51801 687 aa31.28■■■□□ 2.6
HMGB1-205ENST00000399494 ATF7IP2Q5U623 682 aa31.28■■■□□ 2.6
HMGB1-205ENST00000399494 RSPO2Q6UXX9 243 aaPredicted RBP31.28■■■□□ 2.6
HMGB1-205ENST00000399494 SLC7A14Q8TBB6 771 aa31.28■■■□□ 2.6
HMGB1-205ENST00000399494 KIFAP3Q92845 792 aa31.28■■■□□ 2.6
HMGB1-205ENST00000399494 BHMT2Q9H2M3 363 aa31.28■■■□□ 2.6
HMGB1-205ENST00000399494 MTRRQ9UBK8 725 aa31.28■■■□□ 2.6
HMGB1-205ENST00000399494 B3GAT3O94766 335 aa31.27■■■□□ 2.6
HMGB1-205ENST00000399494 GLULP15104 373 aa31.27■■■□□ 2.6
HMGB1-205ENST00000399494 GLRA4Q5JXX5 417 aa31.27■■■□□ 2.6
HMGB1-205ENST00000399494 IGSF22Q8N9C0 903 aa31.27■■■□□ 2.6
HMGB1-205ENST00000399494 ZSCAN16Q9H4T2 348 aaPredicted RBP31.27■■■□□ 2.6
HMGB1-205ENST00000399494 HCFC1R1Q9NWW0 138 aa31.27■■■□□ 2.6
HMGB1-205ENST00000399494 DNMT3BQ9UBC3 853 aaKnown RBP31.27■■■□□ 2.6
HMGB1-205ENST00000399494 R4GN57 208 aa31.27■■■□□ 2.6
HMGB1-205ENST00000399494 UPP1Q16831 310 aa31.26■■■□□ 2.59
HMGB1-205ENST00000399494 ARL6IP4Q66PJ3 421 aaKnown RBP31.26■■■□□ 2.59
HMGB1-205ENST00000399494 MTSS1LQ765P7 747 aa31.26■■■□□ 2.59
HMGB1-205ENST00000399494 RTL10Q7L3V2 364 aa31.26■■■□□ 2.59
HMGB1-205ENST00000399494 C1orf210Q8IVY1 113 aa31.26■■■□□ 2.59
HMGB1-205ENST00000399494 PJA1Q8NG27 643 aa31.26■■■□□ 2.59
HMGB1-205ENST00000399494 SNX29Q8TEQ0 813 aa31.26■■■□□ 2.59
HMGB1-205ENST00000399494 SHDQ96IW2 340 aa31.26■■■□□ 2.59
HMGB1-205ENST00000399494 FOXQ1Q9C009 403 aa31.26■■■□□ 2.59
HMGB1-205ENST00000399494 TNFSF13BQ9Y275 285 aa31.26■■■□□ 2.59
HMGB1-205ENST00000399494 VWA3AA6NCI4 1184 aa31.25■■■□□ 2.59
HMGB1-205ENST00000399494 K7ERI5 159 aa31.25■■■□□ 2.59
HMGB1-205ENST00000399494 LMNAP02545 664 aaKnown RBP31.25■■■□□ 2.59
HMGB1-205ENST00000399494 PDIA4P13667 645 aaKnown RBP31.25■■■□□ 2.59
HMGB1-205ENST00000399494 SF3A1Q15459 793 aaKnown RBP31.25■■■□□ 2.59
HMGB1-205ENST00000399494 KRT79Q5XKE5 535 aa31.25■■■□□ 2.59
HMGB1-205ENST00000399494 KCNG4Q8TDN1 519 aa31.25■■■□□ 2.59
HMGB1-205ENST00000399494 UROC1Q96N76 676 aa31.25■■■□□ 2.59
HMGB1-205ENST00000399494 KIAA1024Q9UPX6 916 aa31.25■■■□□ 2.59
HMGB1-205ENST00000399494 BACE2Q9Y5Z0 518 aa31.25■■■□□ 2.59
HMGB1-205ENST00000399494 CDY1Q9Y6F8 540 aa31.25■■■□□ 2.59
HMGB1-205ENST00000399494 GVINP1Q7Z2Y8 2422 aa31.25■■■□□ 2.59
HMGB1-205ENST00000399494 SMIM28A0A1B0GU29 152 aa31.24■■■□□ 2.59
HMGB1-205ENST00000399494 SP9P0CG40 484 aa31.24■■■□□ 2.59
HMGB1-205ENST00000399494 TKTP29401 623 aaKnown RBP31.24■■■□□ 2.59
HMGB1-205ENST00000399494 SNW1Q13573 536 aaKnown RBP31.24■■■□□ 2.59
HMGB1-205ENST00000399494 IL17AQ16552 155 aa31.24■■■□□ 2.59
HMGB1-205ENST00000399494 ALKAL1Q6UXT8 129 aa31.24■■■□□ 2.59
HMGB1-205ENST00000399494 C3orf58Q8NDZ4 430 aa31.24■■■□□ 2.59
HMGB1-205ENST00000399494 GOLGA2P5Q9HBQ8 144 aa31.24■■■□□ 2.59
HMGB1-205ENST00000399494 ZNF292O60281 2723 aa31.24■■■□□ 2.59
HMGB1-205ENST00000399494 TRAPPC3O43617 180 aa31.23■■■□□ 2.59
HMGB1-205ENST00000399494 LRRN2O75325 713 aa31.23■■■□□ 2.59
HMGB1-205ENST00000399494 ID4P47928 161 aa31.23■■■□□ 2.59
HMGB1-205ENST00000399494 BECN1Q14457 450 aa31.23■■■□□ 2.59
HMGB1-205ENST00000399494 SLC44A4Q53GD3 710 aa31.23■■■□□ 2.59
HMGB1-205ENST00000399494 XKR4Q5GH76 650 aa31.23■■■□□ 2.59
HMGB1-205ENST00000399494 FAM173BQ6P4H8 233 aa31.23■■■□□ 2.59
HMGB1-205ENST00000399494 DDX27Q96GQ7 796 aaKnown RBP31.23■■■□□ 2.59
HMGB1-205ENST00000399494 DDX23Q9BUQ8 820 aaKnown RBP31.23■■■□□ 2.59
HMGB1-205ENST00000399494 KCNH3Q9ULD8 1083 aa31.23■■■□□ 2.59
HMGB1-205ENST00000399494 NOTCH4Q99466 2003 aa31.23■■■□□ 2.59
HMGB1-205ENST00000399494 PP2D1A8MPX8 630 aa31.22■■■□□ 2.59
HMGB1-205ENST00000399494 I3L4J1 428 aa31.22■■■□□ 2.59
HMGB1-205ENST00000399494 BRCC3P46736 316 aa31.22■■■□□ 2.59
HMGB1-205ENST00000399494 PABPC1LQ4VXU2 614 aaKnown RBP31.22■■■□□ 2.59
HMGB1-205ENST00000399494 ANKS3Q6ZW76 656 aa31.22■■■□□ 2.59
HMGB1-205ENST00000399494 APBB1IPQ7Z5R6 666 aaPredicted RBP31.22■■■□□ 2.59
HMGB1-205ENST00000399494 CEP120Q8N960 986 aa31.22■■■□□ 2.59
HMGB1-205ENST00000399494 ACO2Q99798 780 aaKnown RBP31.22■■■□□ 2.59
HMGB1-205ENST00000399494 PTPRHQ9HD43 1115 aa31.22■■■□□ 2.59
HMGB1-205ENST00000399494 DDX19AQ9NUU7 478 aaKnown RBP31.22■■■□□ 2.59
HMGB1-205ENST00000399494 KANSL1LA0AUZ9 987 aa31.21■■■□□ 2.59
HMGB1-205ENST00000399494 GRM5P41594 1212 aa31.21■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms