RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 O00370 1275 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 SUN1O94901 812 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 UNGP13051 313 aaPredicted RBP13.56□□□□□ -0.24
SHMT1-205ENST00000395684 SNRPFP62306 86 aaKnown RBP13.56□□□□□ -0.24
SHMT1-205ENST00000395684 MRPS9P82933 396 aaKnown RBP13.56□□□□□ -0.24
SHMT1-205ENST00000395684 FAM102BQ5T8I3 360 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 PLA2G4FQ68DD2 849 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 FITM2Q8N6M3 262 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 TMEM161BQ8NDZ6 487 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 C7orf43Q8WVR3 580 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 FAM118BQ9BPY3 351 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 PI4K2AQ9BTU6 479 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 DEFB129Q9H1M3 183 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 ATP6V0A4Q9HBG4 840 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 NINJ2Q9NZG7 142 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 TBK1Q9UHD2 729 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 PNMA3Q9UL41 463 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 THAP12O43422 761 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 LYPLA2O95372 231 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 MMP10P09238 476 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 RRM1P23921 792 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 ADCY8P40145 1251 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 BNIP1Q12981 228 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 TNIP1Q15025 636 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 CGB2Q6NT52 195 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 CRELD2Q6UXH1 353 aaPredicted RBP13.55□□□□□ -0.24
SHMT1-205ENST00000395684 SV2AQ7L0J3 742 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 CDAN1Q8IWY9 1227 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 CPA5Q8WXQ8 436 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 KIFAP3Q92845 792 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 STAMBPL1Q96FJ0 436 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 DDX27Q96GQ7 796 aaKnown RBP13.55□□□□□ -0.24
SHMT1-205ENST00000395684 HEMGNQ9BXL5 484 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 PRKAG3Q9UGI9 489 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 ANAPC5Q9UJX4 755 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 NEU2Q9Y3R4 380 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 ZNF536O15090 1300 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 GJB6O95452 261 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 KRT5P13647 590 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 ATP5DP30049 168 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 ALDH5A1P51649 535 aaPredicted RBP13.55□□□□□ -0.24
SHMT1-205ENST00000395684 ADCY1Q08828 1119 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 ZKSCAN8Q15776 578 aaPredicted RBP13.55□□□□□ -0.24
SHMT1-205ENST00000395684 SLC39A4Q6P5W5 647 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 SPATA21Q7Z572 469 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 MCOLN2Q8IZK6 566 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 KIF2BQ8N4N8 673 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 IWS1Q96ST2 819 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 TRAIPQ9BWF2 469 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 VEZTQ9HBM0 779 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 CCPG1Q9ULG6 757 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 NAALADL1Q9UQQ1 740 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 UBIAD1Q9Y5Z9 338 aa13.55□□□□□ -0.24
SHMT1-205ENST00000395684 COL11A2P13942 1736 aaPredicted RBP13.55□□□□□ -0.24
SHMT1-205ENST00000395684 IGF2BP3O00425 579 aaKnown RBP eCLIP13.54□□□□□ -0.24
SHMT1-205ENST00000395684 PLA2G6O60733 806 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 TCEA3O75764 348 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 RPSAP08865 295 aaKnown RBP13.54□□□□□ -0.24
SHMT1-205ENST00000395684 ATF2P15336 505 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 NPTX2P47972 431 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 COPS2P61201 443 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 TMEM63BQ5T3F8 832 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 SYDE1Q6ZW31 735 aaPredicted RBP13.54□□□□□ -0.24
SHMT1-205ENST00000395684 FAM160B2Q86V87 743 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 ATL2Q8NHH9 583 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 AGAP11Q8TF27 550 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 RMDN2Q96LZ7 410 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 MFSD14AQ96MC6 490 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 ARL2BPQ9Y2Y0 163 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 ZNFX1Q9P2E3 1918 aaKnown RBP13.54□□□□□ -0.24
SHMT1-205ENST00000395684 ATP9AO75110 1047 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 GAS8O95995 478 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 MGAT5Q09328 741 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 KLF1Q13351 362 aaPredicted RBP13.54□□□□□ -0.24
SHMT1-205ENST00000395684 MTMR1Q13613 665 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 PRUNE1Q86TP1 453 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 MAP4K3Q8IVH8 894 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 CLEC4DQ8WXI8 215 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 TGS1Q96RS0 853 aaKnown RBP13.54□□□□□ -0.24
SHMT1-205ENST00000395684 EBF2Q9HAK2 575 aa13.54□□□□□ -0.24
SHMT1-205ENST00000395684 MYPNQ86TC9 1320 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 ZNF646O15015 1829 aaPredicted RBP13.53□□□□□ -0.24
SHMT1-205ENST00000395684 DENND3A2RUS2 1198 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 YDJCA8MPS7 323 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 SORBS3O60504 671 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 KRT16P08779 473 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 RALAP11233 206 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 ALADP13716 330 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 PTGER2P43116 358 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 SOX10P56693 466 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 XKR9Q5GH70 373 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 ANKS1BQ7Z6G8 1248 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 C4orf19Q8IY42 314 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 SRRM1Q8IYB3 904 aaKnown RBP13.53□□□□□ -0.24
SHMT1-205ENST00000395684 GRK7Q8WTQ7 553 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 PRCCQ92733 491 aaPredicted RBP13.53□□□□□ -0.24
SHMT1-205ENST00000395684 C9orf72Q96LT7 481 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 FBXL18Q96ME1 805 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 FEM1BQ9UK73 627 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 TRIM33Q9UPN9 1127 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms