RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 HYAL1Q12794 435 aa14.55□□□□□ -0.08
VPS28-202ENST00000377348 ARMCX5Q6P1M9 558 aa14.55□□□□□ -0.08
VPS28-202ENST00000377348 CRELD2Q6UXH1 353 aaPredicted RBP14.55□□□□□ -0.08
VPS28-202ENST00000377348 B3GALT6Q96L58 329 aa14.55□□□□□ -0.08
VPS28-202ENST00000377348 FAM213AQ9BRX8 229 aa14.55□□□□□ -0.08
VPS28-202ENST00000377348 COLEC11Q9BWP8 271 aa14.55□□□□□ -0.08
VPS28-202ENST00000377348 GPR62Q9BZJ7 368 aa14.55□□□□□ -0.08
VPS28-202ENST00000377348 TUBGCP4Q9UGJ1 667 aa14.55□□□□□ -0.08
VPS28-202ENST00000377348 BRWD1Q9NSI6 2320 aa14.55□□□□□ -0.08
VPS28-202ENST00000377348 VCANP13611 3396 aa14.55□□□□□ -0.08
VPS28-202ENST00000377348 CITO14578 2027 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 TULP1O00294 542 aaPredicted RBP14.54□□□□□ -0.08
VPS28-202ENST00000377348 CLIC2O15247 247 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 PRPF40AO75400 957 aaKnown RBP14.54□□□□□ -0.08
VPS28-202ENST00000377348 TADA2AO75478 443 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 RHOBTB3O94955 611 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 CXCL14O95715 111 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 EFEMP2O95967 443 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 GARTP22102 1010 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 NRIP1P48552 1158 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 GUCY2FP51841 1108 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 WNT7BP56706 349 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 KYAT1Q16773 422 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 BMT2Q1RMZ1 405 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 JADE1Q6IE81 842 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 KANK3Q6NY19 840 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 FUT10Q6P4F1 479 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 C3orf58Q8NDZ4 430 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 KIF12Q96FN5 646 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 PLEKHA5Q9HAU0 1116 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 NGRNQ9NPE2 291 aaKnown RBP14.54□□□□□ -0.08
VPS28-202ENST00000377348 AGPAT3Q9NRZ7 376 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 SLC38A7Q9NVC3 462 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 ADAM28Q9UKQ2 775 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 UBE4BO95155 1302 aa14.54□□□□□ -0.08
VPS28-202ENST00000377348 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.53□□□□□ -0.08
VPS28-202ENST00000377348 C2orf71A6NGG8 1288 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 PODXLO00592 558 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 C2CD2LO14523 706 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 LINC01565O15544 149 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 SOD2P04179 222 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 ADRB2P07550 413 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 NFICP08651 508 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 CTSAP10619 480 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 UBE2HP62256 183 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 RBM10P98175 930 aaKnown RBP14.53□□□□□ -0.08
VPS28-202ENST00000377348 TFF2Q03403 129 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 PSMD2Q13200 908 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 SMC1AQ14683 1233 aaKnown RBP14.53□□□□□ -0.08
VPS28-202ENST00000377348 PTPN14Q15678 1187 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 UPP1Q16831 310 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 KNOP1Q1ED39 458 aaKnown RBP14.53□□□□□ -0.08
VPS28-202ENST00000377348 CD300LGQ6UXG3 332 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 EP400NLQ6ZTU2 488 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 RNF168Q8IYW5 571 aaPredicted RBP14.53□□□□□ -0.08
VPS28-202ENST00000377348 MRPL43Q8N983 215 aaKnown RBP14.53□□□□□ -0.08
VPS28-202ENST00000377348 CCDC47Q96A33 483 aaKnown RBP14.53□□□□□ -0.08
VPS28-202ENST00000377348 CCDC34Q96HJ3 373 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 TIGD1Q96MW7 591 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 HERC2P3Q9BVR0 1158 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 TLE6Q9H808 572 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 HSPBP1Q9NZL4 362 aa14.53□□□□□ -0.08
VPS28-202ENST00000377348 I3L4J1 428 aa14.52□□□□□ -0.09
VPS28-202ENST00000377348 EXTL3O43909 919 aa14.52□□□□□ -0.09
VPS28-202ENST00000377348 KINO60870 393 aaKnown RBP14.52□□□□□ -0.09
VPS28-202ENST00000377348 B3GAT3O94766 335 aa14.52□□□□□ -0.09
VPS28-202ENST00000377348 BRCC3P46736 316 aa14.52□□□□□ -0.09
VPS28-202ENST00000377348 KCNB1Q14721 858 aa14.52□□□□□ -0.09
VPS28-202ENST00000377348 ZBTB6Q15916 424 aa14.52□□□□□ -0.09
VPS28-202ENST00000377348 PDE12Q6L8Q7 609 aaKnown RBP14.52□□□□□ -0.09
VPS28-202ENST00000377348 DCLRE1AQ6PJP8 1040 aa14.52□□□□□ -0.09
VPS28-202ENST00000377348 SMYD4Q8IYR2 804 aaPredicted RBP14.52□□□□□ -0.09
VPS28-202ENST00000377348 GPD1LQ8N335 351 aa14.52□□□□□ -0.09
VPS28-202ENST00000377348 HLA-CQ95604 372 aa14.52□□□□□ -0.09
VPS28-202ENST00000377348 PPP2R3CQ969Q6 453 aa14.52□□□□□ -0.09
VPS28-202ENST00000377348 FAM84AQ96KN4 292 aa14.52□□□□□ -0.09
VPS28-202ENST00000377348 UROC1Q96N76 676 aa14.52□□□□□ -0.09
VPS28-202ENST00000377348 CLDND1Q9NY35 253 aa14.52□□□□□ -0.09
VPS28-202ENST00000377348 THEGQ9P2T0 379 aa14.52□□□□□ -0.09
VPS28-202ENST00000377348 MAPK8IP1Q9UQF2 711 aa14.52□□□□□ -0.09
VPS28-202ENST00000377348 PCDHA5Q9Y5H7 936 aa14.52□□□□□ -0.09
VPS28-202ENST00000377348 SF3B1O75533 1304 aaKnown RBP eCLIP14.51□□□□□ -0.093e-6■■■■■ 56
VPS28-202ENST00000377348 PPEF2O14830 753 aa14.51□□□□□ -0.09
VPS28-202ENST00000377348 LDHAP00338 332 aaKnown RBP14.51□□□□□ -0.09
VPS28-202ENST00000377348 URODP06132 367 aa14.51□□□□□ -0.09
VPS28-202ENST00000377348 CYP2J2P51589 502 aa14.51□□□□□ -0.09
VPS28-202ENST00000377348 DLX2Q07687 328 aaPredicted RBP14.51□□□□□ -0.09
VPS28-202ENST00000377348 TMEM132DQ14C87 1099 aa14.51□□□□□ -0.09
VPS28-202ENST00000377348 DUSP6Q16828 381 aa14.51□□□□□ -0.09
VPS28-202ENST00000377348 RTP2Q5QGT7 225 aa14.51□□□□□ -0.09
VPS28-202ENST00000377348 LLGL2Q6P1M3 1020 aa14.51□□□□□ -0.09
VPS28-202ENST00000377348 CLEC17AQ6ZS10 378 aa14.51□□□□□ -0.09
VPS28-202ENST00000377348 HS2ST1Q7LGA3 356 aa14.51□□□□□ -0.09
VPS28-202ENST00000377348 CBWD2Q8IUF1 395 aa14.51□□□□□ -0.09
VPS28-202ENST00000377348 BRSK2Q8IWQ3 736 aa14.51□□□□□ -0.09
VPS28-202ENST00000377348 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.51□□□□□ -0.09
VPS28-202ENST00000377348 CD302Q8IX05 232 aa14.51□□□□□ -0.09
VPS28-202ENST00000377348 EFCAB13Q8IY85 973 aa14.51□□□□□ -0.09
VPS28-202ENST00000377348 VN1R2Q8NFZ6 395 aa14.51□□□□□ -0.09
VPS28-202ENST00000377348 PABPC5Q96DU9 382 aaKnown RBP14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms