RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 COLEC11Q9BWP8 271 aa16.13■□□□□ 0.17
COL9A1-204ENST00000370496 GTPBP4Q9BZE4 634 aaKnown RBP16.13■□□□□ 0.17
COL9A1-204ENST00000370496 GOLGA2P5Q9HBQ8 144 aa16.13■□□□□ 0.17
COL9A1-204ENST00000370496 MARCH5Q9NX47 278 aa16.13■□□□□ 0.17
COL9A1-204ENST00000370496 LMCD1Q9NZU5 365 aa16.13■□□□□ 0.17
COL9A1-204ENST00000370496 LZTS1Q9Y250 596 aa16.13■□□□□ 0.17
COL9A1-204ENST00000370496 MTCH2Q9Y6C9 303 aa16.13■□□□□ 0.17
COL9A1-204ENST00000370496 LACTBL1A8MY62 500 aa16.12■□□□□ 0.17
COL9A1-204ENST00000370496 XPOTO43592 962 aaKnown RBP16.12■□□□□ 0.17
COL9A1-204ENST00000370496 IL18RAPO95256 599 aa16.12■□□□□ 0.17
COL9A1-204ENST00000370496 DNAJB1P25685 340 aa16.12■□□□□ 0.17
COL9A1-204ENST00000370496 TMEM132DQ14C87 1099 aa16.12■□□□□ 0.17
COL9A1-204ENST00000370496 NAB2Q15742 525 aa16.12■□□□□ 0.17
COL9A1-204ENST00000370496 ZNF658Q5TYW1 1059 aaPredicted RBP16.12■□□□□ 0.17
COL9A1-204ENST00000370496 BRSK2Q8IWQ3 736 aa16.12■□□□□ 0.17
COL9A1-204ENST00000370496 GUF1Q8N442 669 aaKnown RBP16.12■□□□□ 0.17
COL9A1-204ENST00000370496 ZSWIM2Q8NEG5 633 aa16.12■□□□□ 0.17
COL9A1-204ENST00000370496 MAFAQ8NHW3 353 aaPredicted RBP16.12■□□□□ 0.17
COL9A1-204ENST00000370496 SPATA20Q8TB22 786 aa16.12■□□□□ 0.17
COL9A1-204ENST00000370496 HASPINQ8TF76 798 aa16.12■□□□□ 0.17
COL9A1-204ENST00000370496 RABGGTAQ92696 567 aa16.12■□□□□ 0.17
COL9A1-204ENST00000370496 C18orf25Q96B23 403 aaPredicted RBP16.12■□□□□ 0.17
COL9A1-204ENST00000370496 NUP62CLQ9H1M0 184 aa16.12■□□□□ 0.17
COL9A1-204ENST00000370496 CLSTN2Q9H4D0 955 aa16.12■□□□□ 0.17
COL9A1-204ENST00000370496 TUBGCP4Q9UGJ1 667 aa16.12■□□□□ 0.17
COL9A1-204ENST00000370496 MAN1B1Q9UKM7 699 aa16.12■□□□□ 0.17
COL9A1-204ENST00000370496 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.12■□□□□ 0.17
COL9A1-204ENST00000370496 F8W810 466 aa16.11■□□□□ 0.17
COL9A1-204ENST00000370496 CALUO43852 315 aaPredicted RBP16.11■□□□□ 0.17
COL9A1-204ENST00000370496 KIF4AO95239 1232 aa16.11■□□□□ 0.17
COL9A1-204ENST00000370496 NFICP08651 508 aa16.11■□□□□ 0.17
COL9A1-204ENST00000370496 POU5F1Q01860 360 aaKnown RBP16.11■□□□□ 0.17
COL9A1-204ENST00000370496 STIM1Q13586 685 aa16.11■□□□□ 0.17
COL9A1-204ENST00000370496 BMS1Q14692 1282 aaKnown RBP16.11■□□□□ 0.17
COL9A1-204ENST00000370496 PLPP4Q5VZY2 271 aa16.11■□□□□ 0.17
COL9A1-204ENST00000370496 JADE1Q6IE81 842 aa16.11■□□□□ 0.17
COL9A1-204ENST00000370496 CRELD2Q6UXH1 353 aaPredicted RBP16.11■□□□□ 0.17
COL9A1-204ENST00000370496 XXYLT1Q8NBI6 393 aa16.11■□□□□ 0.17
COL9A1-204ENST00000370496 MICAL1Q8TDZ2 1067 aa16.11■□□□□ 0.17
COL9A1-204ENST00000370496 PPM1EQ8WY54 764 aa16.11■□□□□ 0.17
COL9A1-204ENST00000370496 TCF25Q9BQ70 676 aa16.11■□□□□ 0.17
COL9A1-204ENST00000370496 PAAF1Q9BRP4 392 aa16.11■□□□□ 0.17
COL9A1-204ENST00000370496 KCTD10Q9H3F6 313 aa16.11■□□□□ 0.17
COL9A1-204ENST00000370496 NSUN3Q9H649 340 aaKnown RBP16.11■□□□□ 0.17
COL9A1-204ENST00000370496 ASB7Q9H672 318 aa16.11■□□□□ 0.17
COL9A1-204ENST00000370496 KIAA1586Q9HCI6 787 aa16.11■□□□□ 0.17
COL9A1-204ENST00000370496 STK39Q9UEW8 545 aa16.11■□□□□ 0.17
COL9A1-204ENST00000370496 ADAM28Q9UKQ2 775 aa16.11■□□□□ 0.17
COL9A1-204ENST00000370496 UBQLN1Q9UMX0 589 aaKnown RBP16.11■□□□□ 0.17
COL9A1-204ENST00000370496 SF3B1O75533 1304 aaKnown RBP eCLIP16.11■□□□□ 0.17
COL9A1-204ENST00000370496 PRRC2BQ5JSZ5 2229 aaKnown RBP16.1■□□□□ 0.17
COL9A1-204ENST00000370496 BIN1O00499 593 aa16.1■□□□□ 0.17
COL9A1-204ENST00000370496 PODXLO00592 558 aa16.1■□□□□ 0.17
COL9A1-204ENST00000370496 PDXKO00764 312 aa16.1■□□□□ 0.17
COL9A1-204ENST00000370496 EXOC3O60645 756 aa16.1■□□□□ 0.17
COL9A1-204ENST00000370496 TADA2AO75478 443 aa16.1■□□□□ 0.17
COL9A1-204ENST00000370496 POU3F3P20264 500 aaPredicted RBP16.1■□□□□ 0.17
COL9A1-204ENST00000370496 CLCNKBP51801 687 aa16.1■□□□□ 0.17
COL9A1-204ENST00000370496 SOX4Q06945 474 aaPredicted RBP16.1■□□□□ 0.17
COL9A1-204ENST00000370496 CCDC85BQ15834 202 aaPredicted RBP16.1■□□□□ 0.17
COL9A1-204ENST00000370496 SNRNP35Q16560 246 aaKnown RBP16.1■□□□□ 0.17
COL9A1-204ENST00000370496 ISM2Q6H9L7 571 aa16.1■□□□□ 0.17
COL9A1-204ENST00000370496 DDX53Q86TM3 631 aaKnown RBP16.1■□□□□ 0.17
COL9A1-204ENST00000370496 CBWD2Q8IUF1 395 aa16.1■□□□□ 0.17
COL9A1-204ENST00000370496 C12orf56Q8IXR9 622 aa16.1■□□□□ 0.17
COL9A1-204ENST00000370496 VPS52Q8N1B4 723 aa16.1■□□□□ 0.17
COL9A1-204ENST00000370496 BEST2Q8NFU1 509 aa16.1■□□□□ 0.17
COL9A1-204ENST00000370496 PPP2R3CQ969Q6 453 aa16.1■□□□□ 0.17
COL9A1-204ENST00000370496 TSPAN18Q96SJ8 248 aa16.1■□□□□ 0.17
COL9A1-204ENST00000370496 DERAQ9Y315 318 aa16.1■□□□□ 0.17
COL9A1-204ENST00000370496 C2CD2Q9Y426 696 aa16.1■□□□□ 0.17
COL9A1-204ENST00000370496 ZNF233A6NK53 670 aa16.09■□□□□ 0.17
COL9A1-204ENST00000370496 B3GAT3O94766 335 aa16.09■□□□□ 0.17
COL9A1-204ENST00000370496 MBD3O95983 291 aa16.09■□□□□ 0.17
COL9A1-204ENST00000370496 NR3C1P04150 777 aa16.09■□□□□ 0.17
COL9A1-204ENST00000370496 URODP06132 367 aa16.09■□□□□ 0.17
COL9A1-204ENST00000370496 ADRB2P07550 413 aa16.09■□□□□ 0.17
COL9A1-204ENST00000370496 IRS1P35568 1242 aa16.09■□□□□ 0.17
COL9A1-204ENST00000370496 SMC1AQ14683 1233 aaKnown RBP16.09■□□□□ 0.17
COL9A1-204ENST00000370496 SKIV2LQ15477 1246 aaKnown RBP16.09■□□□□ 0.17
COL9A1-204ENST00000370496 PDE12Q6L8Q7 609 aaKnown RBP16.09■□□□□ 0.17
COL9A1-204ENST00000370496 FUT10Q6P4F1 479 aa16.09■□□□□ 0.17
COL9A1-204ENST00000370496 TMC7Q7Z402 723 aa16.09■□□□□ 0.17
COL9A1-204ENST00000370496 DDX27Q96GQ7 796 aaKnown RBP16.09■□□□□ 0.17
COL9A1-204ENST00000370496 TSG101Q99816 390 aa16.09■□□□□ 0.17
COL9A1-204ENST00000370496 HERC2P3Q9BVR0 1158 aa16.09■□□□□ 0.17
COL9A1-204ENST00000370496 ZBP1Q9H171 429 aa16.09■□□□□ 0.17
COL9A1-204ENST00000370496 PCDHGC5Q9Y5F6 944 aa16.09■□□□□ 0.17
COL9A1-204ENST00000370496 EYSQ5T1H1 3165 aa16.08■□□□□ 0.17
COL9A1-204ENST00000370496 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.08■□□□□ 0.16
COL9A1-204ENST00000370496 PSMA7O14818 248 aa16.08■□□□□ 0.16
COL9A1-204ENST00000370496 CYP3A5P20815 502 aa16.08■□□□□ 0.16
COL9A1-204ENST00000370496 NR2F2P24468 414 aa16.08■□□□□ 0.16
COL9A1-204ENST00000370496 RPL9P32969 192 aaKnown RBP16.08■□□□□ 0.16
COL9A1-204ENST00000370496 PRCPP42785 496 aa16.08■□□□□ 0.16
COL9A1-204ENST00000370496 GUCY2FP51841 1108 aa16.08■□□□□ 0.16
COL9A1-204ENST00000370496 ERVFC1P60507 584 aa16.08■□□□□ 0.16
COL9A1-204ENST00000370496 TFAMQ00059 246 aaKnown RBP16.08■□□□□ 0.16
COL9A1-204ENST00000370496 CAMK1Q14012 370 aa16.08■□□□□ 0.16
COL9A1-204ENST00000370496 UPP1Q16831 310 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms