RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 RFX1P22670 979 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 NPTX2P47972 431 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 ACOT2P49753 483 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 MRPS9P82933 396 aaKnown RBP12.94□□□□□ -0.34
CLIP3-201ENST00000360535 DMP1Q13316 513 aaPredicted RBP12.94□□□□□ -0.34
CLIP3-201ENST00000360535 SEZ6Q53EL9 994 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 LACTB2Q53H82 288 aaPredicted RBP12.94□□□□□ -0.34
CLIP3-201ENST00000360535 ACAD10Q6JQN1 1059 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 SHC3Q92529 594 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 KCND2Q9NZV8 630 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 TBX20Q9UMR3 447 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 TELO2Q9Y4R8 837 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 YDJCA8MPS7 323 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 GOLGA8SH3BPF8 625 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 GOLGA8MH3BSY2 632 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 SUN1O94901 812 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 ZSCAN5DPP0CG00 497 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 GZMAP12544 262 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 PLCB3Q01970 1234 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 TRAF1Q13077 416 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 HELQQ8TDG4 1101 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 SNF8Q96H20 258 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 RIT2Q99578 217 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 PCNTO95613 3336 aa12.93□□□□□ -0.34
CLIP3-201ENST00000360535 ENTPD3O75355 529 aa12.93□□□□□ -0.34
CLIP3-201ENST00000360535 IFNB1P01574 187 aa12.93□□□□□ -0.34
CLIP3-201ENST00000360535 PSMC4P43686 418 aa12.93□□□□□ -0.34
CLIP3-201ENST00000360535 NSFP46459 744 aaKnown RBP12.93□□□□□ -0.34
CLIP3-201ENST00000360535 PREPLQ4J6C6 727 aaPredicted RBP12.93□□□□□ -0.34
CLIP3-201ENST00000360535 TEX2Q8IWB9 1127 aa12.93□□□□□ -0.34
CLIP3-201ENST00000360535 OGFOD1Q8N543 542 aa12.93□□□□□ -0.34
CLIP3-201ENST00000360535 BSNDQ8WZ55 320 aa12.93□□□□□ -0.34
CLIP3-201ENST00000360535 STRA6Q9BX79 667 aa12.93□□□□□ -0.34
CLIP3-201ENST00000360535 NKIRAS1Q9NYS0 192 aa12.93□□□□□ -0.34
CLIP3-201ENST00000360535 DHX15O43143 795 aaKnown RBP12.93□□□□□ -0.34
CLIP3-201ENST00000360535 GGPS1O95749 300 aa12.93□□□□□ -0.34
CLIP3-201ENST00000360535 CYP1A2P05177 515 aa12.93□□□□□ -0.34
CLIP3-201ENST00000360535 ETS1P14921 441 aa12.93□□□□□ -0.34
CLIP3-201ENST00000360535 ELF1P32519 619 aa12.93□□□□□ -0.34
CLIP3-201ENST00000360535 ZNF394Q53GI3 561 aa12.93□□□□□ -0.34
CLIP3-201ENST00000360535 IZUMO3Q5VZ72 239 aa12.93□□□□□ -0.34
CLIP3-201ENST00000360535 VSTM1Q6UX27 236 aa12.93□□□□□ -0.34
CLIP3-201ENST00000360535 KCNV2Q8TDN2 545 aa12.93□□□□□ -0.34
CLIP3-201ENST00000360535 LBHD1Q9BQE6 289 aaPredicted RBP12.93□□□□□ -0.34
CLIP3-201ENST00000360535 AGO4Q9HCK5 861 aaKnown RBP12.93□□□□□ -0.34
CLIP3-201ENST00000360535 ZNF70Q9UC06 446 aaPredicted RBP12.93□□□□□ -0.34
CLIP3-201ENST00000360535 SIPA1L1O43166 1804 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 RASA4BC9J798 803 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 RASA4O43374 803 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 DNAJC8O75937 253 aaPredicted RBP12.92□□□□□ -0.34
CLIP3-201ENST00000360535 TTC4O95801 387 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 HSPA1LP34931 641 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 RPS6P62753 249 aaKnown RBP12.92□□□□□ -0.34
CLIP3-201ENST00000360535 SPOCK2Q92563 424 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 FAM212AQ96EL1 285 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 FNBP1Q96RU3 617 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 QTRT2Q9H974 415 aaKnown RBP12.92□□□□□ -0.34
CLIP3-201ENST00000360535 KIF9Q9HAQ2 790 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 C1orf112Q9NSG2 853 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 NINJ2Q9NZG7 142 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 NAALADL1Q9UQQ1 740 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 ASTN2O75129 1339 aaPredicted RBP12.92□□□□□ -0.34
CLIP3-201ENST00000360535 ZNF831Q5JPB2 1677 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 GBP1P32455 592 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 ALDH5A1P51649 535 aaPredicted RBP12.92□□□□□ -0.34
CLIP3-201ENST00000360535 SLC27A3Q5K4L6 730 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 TMEM270Q6UE05 265 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 SPATA21Q7Z572 469 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 C4orf33Q8N1A6 199 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 PSPC1Q8WXF1 523 aaKnown RBP12.92□□□□□ -0.34
CLIP3-201ENST00000360535 RMDN2Q96LZ7 410 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 RMDN3Q96TC7 470 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 SAYSD1Q9NPB0 183 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 UVRAGQ9P2Y5 699 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 GABBR1Q9UBS5 961 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 HERC5Q9UII4 1024 aaKnown RBP12.92□□□□□ -0.34
CLIP3-201ENST00000360535 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.92□□□□□ -0.34
CLIP3-201ENST00000360535 WDR91A4D1P6 747 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 KRT15P19012 456 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 CAP2P40123 477 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 GSCP56915 257 aaPredicted RBP12.92□□□□□ -0.34
CLIP3-201ENST00000360535 TAS2R40P59535 323 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 GTF2BQ00403 316 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 ITIH4Q14624 930 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 TRMT10CQ7L0Y3 403 aaKnown RBP12.92□□□□□ -0.34
CLIP3-201ENST00000360535 LRRC19Q9H756 370 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 C10orf88Q9H8K7 445 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 TMEM8AQ9HCN3 771 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 ZNF148Q9UQR1 794 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 CEP83Q9Y592 693 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 KAT6AQ92794 2004 aa12.92□□□□□ -0.34
CLIP3-201ENST00000360535 GREB1LQ9C091 1923 aaPredicted RBP12.91□□□□□ -0.34
CLIP3-201ENST00000360535 CCNE2O96020 404 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 GHRP10912 638 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 HADHBP55084 474 aaKnown RBP12.91□□□□□ -0.34
CLIP3-201ENST00000360535 DNAJC3Q13217 504 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 CLEC16AQ2KHT3 1053 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 P3H1Q32P28 736 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 SPDYCQ5MJ68 293 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 ARHGEF16Q5VV41 709 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms