RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CKBP12277 381 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 CDK17Q00537 523 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 NFX1Q12986 1120 aaKnown RBP20.09■□□□□ 0.81
CLN3-206ENST00000360019 DUOXA2Q1HG44 320 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 SFMBT2Q5VUG0 894 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 TOGARAM2Q6ZUX3 1019 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 U2AF1L4Q8WU68 220 aaKnown RBP20.09■□□□□ 0.81
CLN3-206ENST00000360019 CCDC94Q9BW85 323 aaPredicted RBP20.09■□□□□ 0.81
CLN3-206ENST00000360019 SEZ6LQ9BYH1 1024 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 STK33Q9BYT3 514 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 TRIM6Q9C030 488 aaPredicted RBP20.09■□□□□ 0.81
CLN3-206ENST00000360019 ASB7Q9H672 318 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 ARHGAP20Q9P2F6 1191 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 MYO6Q9UM54 1294 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 SGPL1O95470 568 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 PLEKP08567 350 aaPredicted RBP20.09■□□□□ 0.81
CLN3-206ENST00000360019 RFX1P22670 979 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 PIK3CAP42336 1068 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 CTCFP49711 727 aaPredicted RBP20.09■□□□□ 0.81
CLN3-206ENST00000360019 TFAMQ00059 246 aaKnown RBP20.09■□□□□ 0.81
CLN3-206ENST00000360019 LPIN1Q14693 890 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 HGSNATQ68CP4 663 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 JADE1Q6IE81 842 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 TRAPPC11Q7Z392 1133 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 FAM126BQ8IXS8 530 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 UBE2TQ9NPD8 197 aaPredicted RBP20.09■□□□□ 0.81
CLN3-206ENST00000360019 AIPL1Q9NZN9 384 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 DAAM1Q9Y4D1 1078 aa20.09■□□□□ 0.81
CLN3-206ENST00000360019 F8VZ95 297 aa20.08■□□□□ 0.8
CLN3-206ENST00000360019 PNMA6AP0CW24 399 aaPredicted RBP20.08■□□□□ 0.8
CLN3-206ENST00000360019 CD52P31358 61 aa20.08■□□□□ 0.8
CLN3-206ENST00000360019 DRAP1Q14919 205 aaPredicted RBP20.08■□□□□ 0.8
CLN3-206ENST00000360019 PKN2Q16513 984 aaKnown RBP20.08■□□□□ 0.8
CLN3-206ENST00000360019 HELQQ8TDG4 1101 aa20.08■□□□□ 0.8
CLN3-206ENST00000360019 KAT5Q92993 513 aa20.08■□□□□ 0.8
CLN3-206ENST00000360019 CXCL16Q9H2A7 254 aa20.08■□□□□ 0.8
CLN3-206ENST00000360019 ERVK-5Q9HDB9 667 aa20.08■□□□□ 0.8
CLN3-206ENST00000360019 PADI3Q9ULW8 664 aa20.08■□□□□ 0.8
CLN3-206ENST00000360019 CITO14578 2027 aa20.08■□□□□ 0.8
CLN3-206ENST00000360019 USP27XA6NNY8 438 aa20.07■□□□□ 0.8
CLN3-206ENST00000360019 GPR182O15218 404 aa20.07■□□□□ 0.8
CLN3-206ENST00000360019 CST3P01034 146 aaPredicted RBP20.07■□□□□ 0.8
CLN3-206ENST00000360019 TMEM191BP0C7N4 346 aa20.07■□□□□ 0.8
CLN3-206ENST00000360019 NCOA4Q13772 614 aa20.07■□□□□ 0.8
CLN3-206ENST00000360019 TWF2Q6IBS0 349 aaKnown RBP20.07■□□□□ 0.8
CLN3-206ENST00000360019 SMG8Q8ND04 991 aaKnown RBP20.07■□□□□ 0.8
CLN3-206ENST00000360019 TATDN2Q93075 761 aa20.07■□□□□ 0.8
CLN3-206ENST00000360019 NT5C1BQ96P26 610 aa20.07■□□□□ 0.8
CLN3-206ENST00000360019 ZNF500O60304 480 aaPredicted RBP20.06■□□□□ 0.8
CLN3-206ENST00000360019 ZC3H11AO75152 810 aaKnown RBP eCLIP20.06■□□□□ 0.8
CLN3-206ENST00000360019 CD4P01730 458 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 TFRCP02786 760 aaKnown RBP20.06■□□□□ 0.8
CLN3-206ENST00000360019 MBTPS1Q14703 1052 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 ARHGAP44Q17R89 818 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 SPOPLQ6IQ16 392 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 TMEM130Q8N3G9 435 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 PPM1KQ8N3J5 372 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 ANKRD36BP1Q96IX9 119 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 SNX27Q96L92 541 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 KREMEN1Q96MU8 473 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 DESI2Q9BSY9 194 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 NHEJ1Q9H9Q4 299 aaPredicted RBP20.06■□□□□ 0.8
CLN3-206ENST00000360019 CHST12Q9NRB3 414 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 IPPQ9Y573 584 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 PHACTR2O75167 634 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 RECQL4O94761 1208 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 TNNC2P02585 160 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 AKAP5P24588 427 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 ARID5AQ03989 594 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 PAK2Q13177 524 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 ASIC2Q16515 512 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 IRF2BP2Q7Z5L9 587 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 APOL6Q9BWW8 343 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 RNF39Q9H2S5 420 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 PLEKHA5Q9HAU0 1116 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 APOBEC3GQ9HC16 384 aaKnown RBP20.06■□□□□ 0.8
CLN3-206ENST00000360019 KCND1Q9NSA2 647 aa20.06■□□□□ 0.8
CLN3-206ENST00000360019 RALGAPA2Q2PPJ7 1873 aa20.05■□□□□ 0.8
CLN3-206ENST00000360019 SERPING1P05155 500 aa20.05■□□□□ 0.8
CLN3-206ENST00000360019 STAT1P42224 750 aa20.05■□□□□ 0.8
CLN3-206ENST00000360019 ALKAL1Q6UXT8 129 aa20.05■□□□□ 0.8
CLN3-206ENST00000360019 CD302Q8IX05 232 aa20.05■□□□□ 0.8
CLN3-206ENST00000360019 CCAR2Q8N163 923 aaKnown RBP20.05■□□□□ 0.8
CLN3-206ENST00000360019 C1orf127Q8N9H9 656 aa20.05■□□□□ 0.8
CLN3-206ENST00000360019 CAGE1Q8TC20 777 aa20.05■□□□□ 0.8
CLN3-206ENST00000360019 C2CD2Q9Y426 696 aa20.05■□□□□ 0.8
CLN3-206ENST00000360019 EPN1Q9Y6I3 576 aaPredicted RBP20.05■□□□□ 0.8
CLN3-206ENST00000360019 SQORQ9Y6N5 450 aa20.05■□□□□ 0.8
CLN3-206ENST00000360019 FOXN3O00409 490 aaPredicted RBP20.04■□□□□ 0.8
CLN3-206ENST00000360019 MGEA5O60502 916 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 NDUFA10O95299 355 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 SOX5P35711 763 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 ATN1P54259 1190 aaPredicted RBP20.04■□□□□ 0.8
CLN3-206ENST00000360019 YARSP54577 528 aaKnown RBP20.04■□□□□ 0.8
CLN3-206ENST00000360019 GCNT1Q02742 428 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 TMEM132DQ14C87 1099 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 WDR44Q5JSH3 913 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 USP38Q8NB14 1042 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 CXorf38Q8TB03 319 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 DIS3LQ8TF46 1054 aaKnown RBP20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms