RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 PPP1R36Q96LQ0 422 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 FAM118BQ9BPY3 351 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 CARD9Q9H257 536 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 MAGEA13PA6NCF6 341 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 MTM1Q13496 603 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 C1orf228Q6PIY5 440 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 EEPD1Q7L9B9 569 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 HAUS6Q7Z4H7 955 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 TEX2Q8IWB9 1127 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 CCDC134Q9H6E4 229 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 MINPP1Q9UNW1 487 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 ATP6V1B1P15313 513 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 TRPC1P48995 793 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 EDRF1Q3B7T1 1238 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 GCOM2Q9BZD3 368 aaPredicted RBP20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 RGL1Q9NZL6 768 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 HAO1Q9UJM8 370 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 CPSF3Q9UKF6 684 aaKnown RBP20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 UTYO14607 1347 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 SPATA31D1Q6ZQQ2 1576 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 LOC100653049A0A140TA62 436 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 SLC16A3O15427 465 aaKnown RBP20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 KRT34O76011 436 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 JAK3P52333 1124 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 CATSPER3Q86XQ3 398 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 PPP1R16BQ96T49 567 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 MOV10L1Q9BXT6 1211 aaKnown RBP20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 FOXP3Q9BZS1 431 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 HPSEQ9Y251 543 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 PIK3R2O00459 728 aa20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 ACTR2P61160 394 aa20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 MRPS15P82914 257 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 ADGRF4Q8IZF3 695 aa20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 NAF1Q96HR8 494 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 LXNQ9BS40 222 aa20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 EYA4O95677 639 aa20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 P4HBP07237 508 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 QARSP47897 775 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 ATXN3P54252 364 aaPredicted RBP20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 FASTKD1Q53R41 847 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 RWDD4Q6NW29 188 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 KRT27Q7Z3Y8 459 aa20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 NEMP1O14524 444 aa20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 PPEF1O14829 653 aaPredicted RBP20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 ZCCHC18P0CG32 403 aa20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 CEP55Q53EZ4 464 aa20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 SULF1Q8IWU6 871 aa20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 SERPINB12Q96P63 405 aa20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 TMEM117Q9H0C3 514 aa20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 MAPRE2Q15555 327 aa20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 EPS8L3Q8TE67 593 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 OSBPL8Q9BZF1 889 aa20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 PPCSQ9HAB8 311 aa20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 ATP6V0A4Q9HBG4 840 aa20.59■□□□□ 0.89
CCDC88B-202ENST00000356786 CAND2O75155 1236 aa20.58■□□□□ 0.89
CCDC88B-202ENST00000356786 UBOX5O94941 541 aa20.58■□□□□ 0.89
CCDC88B-202ENST00000356786 APOA1P02647 267 aa20.58■□□□□ 0.89
CCDC88B-202ENST00000356786 APRTP07741 180 aa20.58■□□□□ 0.89
CCDC88B-202ENST00000356786 KRT4P19013 534 aa20.58■□□□□ 0.89
CCDC88B-202ENST00000356786 ZCWPW2Q504Y3 356 aa20.58■□□□□ 0.89
CCDC88B-202ENST00000356786 C3orf62Q6ZUJ4 267 aa20.58■□□□□ 0.89
CCDC88B-202ENST00000356786 SYN2Q92777 582 aaPredicted RBP20.58■□□□□ 0.89
CCDC88B-202ENST00000356786 DAB1O75553 588 aa20.58■□□□□ 0.89
CCDC88B-202ENST00000356786 GNAT1P11488 350 aa20.58■□□□□ 0.89
CCDC88B-202ENST00000356786 CACNB3P54284 484 aa20.58■□□□□ 0.89
CCDC88B-202ENST00000356786 MAPK7Q13164 816 aa20.58■□□□□ 0.89
CCDC88B-202ENST00000356786 KPNB1Q14974 876 aaKnown RBP20.58■□□□□ 0.89
CCDC88B-202ENST00000356786 NEDD1Q8NHV4 660 aa20.58■□□□□ 0.89
CCDC88B-202ENST00000356786 ISCA1Q9BUE6 129 aa20.58■□□□□ 0.89
CCDC88B-202ENST00000356786 ARHGAP26Q9UNA1 814 aa20.58■□□□□ 0.89
CCDC88B-202ENST00000356786 AIM2O14862 343 aa20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 OSBPP22059 807 aa20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 SLC44A4Q53GD3 710 aa20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 SLC27A3Q5K4L6 730 aa20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 FAM102AQ5T9C2 384 aaPredicted RBP20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 TTC8Q8TAM2 541 aa20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 TMA16Q96EY4 203 aaKnown RBP20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 KDM4CQ9H3R0 1056 aa20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 ZNF446Q9NWS9 450 aa20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 PKD2L2Q9NZM6 624 aa20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 ZC3H7BQ9UGR2 993 aaKnown RBP20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 SESN2P58004 480 aaPredicted RBP20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 ZNF200P98182 395 aaPredicted RBP20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 KCTD2Q14681 263 aa20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 KCNB2Q92953 911 aa20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 CCT7Q99832 543 aa20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 DNAJC5Q9H3Z4 198 aa20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 PAPOLBQ9NRJ5 636 aaKnown RBP20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 NAGPAQ9UK23 515 aa20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 NEURL4Q96JN8 1562 aa20.58■□□□□ 0.88
CCDC88B-202ENST00000356786 TMEM131LA2VDJ0 1609 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 CDKL3Q8IVW4 592 aaPredicted RBP20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 RCOR2Q8IZ40 523 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 TPCN2Q8NHX9 752 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 PBXIP1Q96AQ6 731 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 KLHL2O95198 593 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 OVGP1Q12889 678 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 CAPRIN1Q14444 709 aaKnown RBP20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 RNF135Q8IUD6 432 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms