RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 PPME1Q9Y570 386 aa9.96□□□□□ -0.82
USP4-202ENST00000351842 TBKBP1A7MCY6 615 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 WEE2P0C1S8 567 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 MGAT3Q09327 533 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 GPNMBQ14956 572 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 EXOC3L4Q17RC7 722 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 INTS8Q75QN2 995 aaKnown RBP9.95□□□□□ -0.82
USP4-202ENST00000351842 CEP57Q86XR8 500 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 DNAAF5Q86Y56 855 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 SLC43A3Q8NBI5 491 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 SMG8Q8ND04 991 aaKnown RBP9.95□□□□□ -0.82
USP4-202ENST00000351842 ZNF516Q92618 1163 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 TRIM44Q96DX7 344 aaPredicted RBP9.95□□□□□ -0.82
USP4-202ENST00000351842 PRIMPOLQ96LW4 560 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 MIOSQ9NXC5 875 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 TBX21Q9UL17 535 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 C2CD2LO14523 706 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 OFD1O75665 1012 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 CLTAP09496 248 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 KRT5P13647 590 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 GARTP22102 1010 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 EEF1GP26641 437 aaKnown RBP9.95□□□□□ -0.82
USP4-202ENST00000351842 OR1G1P47890 313 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 MYL6P60660 151 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 MCL1Q07820 350 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 TMEM132DQ14C87 1099 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 WDR72Q3MJ13 1102 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 MIIPQ5JXC2 388 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 UBXN11Q5T124 520 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 ANKRD33Q7Z3H0 272 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 PPFIBP1Q86W92 1011 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 LINC01599Q8WXQ3 324 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 CEP63Q96MT8 703 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 BPIFA3Q9BQP9 254 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 TMEM117Q9H0C3 514 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 ERVK-5Q9HDB9 667 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 NUB1Q9Y5A7 615 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 PCDHB7Q9Y5E2 793 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 SPTBN5Q9NRC6 3674 aaKnown RBP9.95□□□□□ -0.82
USP4-202ENST00000351842 ARL5CA6NH57 179 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 B3GAT3O94766 335 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 FMO5P49326 533 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 RABGGTBP53611 331 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 CDH8P55286 799 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 CDC42EP1Q00587 391 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 EPC2Q52LR7 807 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 TRIM59Q8IWR1 403 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 SEMA4DQ92854 862 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 TATDN2Q93075 761 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 SPAG5Q96R06 1193 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 ST6GALNAC4Q9H4F1 302 aa9.95□□□□□ -0.82
USP4-202ENST00000351842 TNNC2P02585 160 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 CASP14P31944 242 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 KCNJ6P48051 423 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 IKBKEQ14164 716 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 TDRD10Q5VZ19 366 aaKnown RBP9.94□□□□□ -0.82
USP4-202ENST00000351842 TRAF7Q6Q0C0 670 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 GLB1LQ6UWU2 654 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 AGMOQ6ZNB7 445 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 TMEM199Q8N511 208 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 FAM193BQ96PV7 902 aaPredicted RBP9.94□□□□□ -0.82
USP4-202ENST00000351842 RSAD1Q9HA92 442 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 PTPRHQ9HD43 1115 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 UBE2TQ9NPD8 197 aaPredicted RBP9.94□□□□□ -0.82
USP4-202ENST00000351842 CPSF3Q9UKF6 684 aaKnown RBP9.94□□□□□ -0.82
USP4-202ENST00000351842 UBE4BO95155 1302 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 LGALS16A8MUM7 142 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 RNF225M0QZC1 329 aaPredicted RBP9.94□□□□□ -0.82
USP4-202ENST00000351842 ABLIM1O14639 778 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 MEFVO15553 781 aaPredicted RBP9.94□□□□□ -0.82
USP4-202ENST00000351842 HCRTO43612 131 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 DNAJB2P25686 324 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 ARPP19P56211 112 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 SOX4Q06945 474 aaPredicted RBP9.94□□□□□ -0.82
USP4-202ENST00000351842 NCOA4Q13772 614 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 UVSSAQ2YD98 709 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 TRAPPC11Q7Z392 1133 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 ZNF280BQ86YH2 543 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 NEK11Q8NG66 645 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 JAKMIP2Q96AA8 810 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 HVCN1Q96D96 273 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 ANKRD36BP1Q96IX9 119 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 YME1L1Q96TA2 773 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 DMAC2Q9NW81 257 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 DNAJB4Q9UDY4 337 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 POLIQ9UNA4 740 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 SNX9Q9Y5X1 595 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 SMIM28A0A1B0GU29 152 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 ENPP3O14638 875 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 LDHAP00338 332 aaKnown RBP9.94□□□□□ -0.82
USP4-202ENST00000351842 TIMP1P01033 207 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 HLA-DRAP01903 254 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 MCF2P10911 925 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 SKILP12757 684 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 MYOGP15173 224 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 NKX3-2P78367 333 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 PTPN11Q06124 597 aaPredicted RBP9.94□□□□□ -0.82
USP4-202ENST00000351842 RBL2Q08999 1139 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 DUOXA2Q1HG44 320 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 TDRD12Q587J7 1177 aaKnown RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms